View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4283_high_3 (Length: 475)

Name: NF4283_high_3
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4283_high_3
NF4283_high_3
[»] chr2 (10 HSPs)
chr2 (1-457)||(37182039-37182495)
chr2 (54-123)||(13800846-13800915)
chr2 (54-114)||(11952943-11953003)
chr2 (65-117)||(21666041-21666093)
chr2 (37-116)||(11913055-11913134)
chr2 (76-123)||(29694084-29694131)
chr2 (65-123)||(45156355-45156413)
chr2 (54-123)||(28425877-28425946)
chr2 (65-113)||(21190934-21190982)
chr2 (65-113)||(30175529-30175577)
[»] chr6 (2 HSPs)
chr6 (65-126)||(20611501-20611562)
chr6 (37-130)||(4036779-4036870)
[»] chr1 (2 HSPs)
chr1 (37-128)||(39135042-39135133)
chr1 (65-113)||(5128255-5128303)
[»] chr4 (5 HSPs)
chr4 (37-129)||(22315787-22315879)
chr4 (81-124)||(22076987-22077030)
chr4 (65-112)||(36363218-36363265)
chr4 (65-113)||(24404209-24404256)
chr4 (65-117)||(36118806-36118858)
[»] chr7 (6 HSPs)
chr7 (65-120)||(7398159-7398214)
chr7 (63-125)||(26918029-26918091)
chr7 (54-108)||(20152915-20152969)
chr7 (76-123)||(27237776-27237823)
chr7 (66-104)||(36903643-36903681)
chr7 (65-125)||(12419833-12419893)
[»] chr8 (9 HSPs)
chr8 (64-122)||(38009489-38009547)
chr8 (76-123)||(15078456-15078503)
chr8 (65-125)||(5973369-5973429)
chr8 (81-120)||(41063077-41063116)
chr8 (65-123)||(7944774-7944832)
chr8 (69-123)||(39332586-39332640)
chr8 (42-111)||(5721437-5721506)
chr8 (86-123)||(25562042-25562079)
chr8 (37-117)||(8645920-8646000)
[»] scaffold1320 (1 HSPs)
scaffold1320 (76-123)||(1052-1099)
[»] chr5 (5 HSPs)
chr5 (65-111)||(1366852-1366898)
chr5 (65-123)||(24395445-24395503)
chr5 (43-104)||(4931860-4931921)
chr5 (65-124)||(11242659-11242718)
chr5 (65-123)||(15639157-15639215)
[»] chr3 (1 HSPs)
chr3 (65-123)||(28689806-28689864)


Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 37182495 - 37182039
Alignment:
Q  1 aataaggaatttttatttatttatttagtgtagtac-actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctt 99  Q
    |||||| |||||||||||||||| |  | ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  37182495 aataagaaatttttatttatttagtggg-gtagtaccactgagctataatttcctttttgacgctcttaccttggggaggtccagctccattgagctctt 37182397  T
Q  100 tgcacaccccaaggtccgaccctgcttataatagtgattaaagggtgtaattattaagaataaaacaaaccatagttgaactcattgattcaattgaacc 199  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  37182396 tgcacaccccaaggtccgaccctgcttataatagtgatcagaaggtgtaattattaagcataaaacaaaccataattgaactcattgattcaattgaacc 37182297  T
Q  200 atagtttagatctctcgttggattgaactatacggtcgaannnnnnnnattttcgttgtgacttaaccttagtatttttctcagtgttctcatacggaga 299  Q
    |||||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37182296 atagtttagatctctccttggattgaactatacggtcgatttttttatattttcgttgtgacttaaccttagtatttttctcagtgttctcatacggaga 37182197  T
Q  300 taacttataagtcaatgcaacaatatttgtataatgcacatgcggttgttgaaaggtgacaaatattggcagtgaaaatattactaggtgacaatgacat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37182196 taacttataagtcaatgcaacaatatttgtataatgcacatgcggttgttgaaaggtgacaaatattggcagtgaaaatattactaggtgacaatgacat 37182097  T
Q  400 tggcaatggtggaaggggcaatgacaaaggtttccttccctatgatggtgatgataat 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37182096 tggcaatggtggaaggggcaatgacaaaggtttccttccctatgatggtgatgataat 37182039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 13800846 - 13800915
Alignment:
Q  54 tttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    ||||||| |||||||||||||| ||  ||| |||||||||||| ||||||||||||||||||||||||||    
T  13800846 tttttgaggctcataccttggaaagacccaactccattgagctttttgcacaccccaaggtccgaccctg 13800915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 11952943 - 11953003
Alignment:
Q  54 tttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggt 114  Q
    ||||||| ||||||||||||| |||| |||| |||||||||||| ||||||||||||||||    
T  11952943 tttttgaggctcataccttggggaggcccagttccattgagctccttgcacaccccaaggt 11953003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 21666041 - 21666093
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccg 117  Q
    |||||||||| |||| |||| |||||||||||| |||||||||||||||||||    
T  21666041 cataccttggggaggcccagttccattgagctccttgcacaccccaaggtccg 21666093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 11913055 - 11913134
Alignment:
Q  37 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtcc 116  Q
    |||| |||||||| |  ||||||| | ||||||||| |||||| ||| ||||||||| ||||||||||||||||| ||||    
T  11913055 actgtgctataatattttttttgaagttcataccttagagaggcccaactccattgaactctttgcacaccccaaagtcc 11913134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 29694131 - 29694084
Alignment:
Q  76 gaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||    
T  29694131 gaggcccagctccattgagctctttgcacaccccaaggtgcggccctg 29694084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 45156355 - 45156413
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||||||||| |||| |||||||||||||||| ||||||| |||||||| |||| ||||    
T  45156355 cataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgagcctg 45156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 28425877 - 28425946
Alignment:
Q  54 tttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    ||||||| || |||||||||| | ||||||| |||||||||   |||||||||||||||||| |||||||    
T  28425877 tttttgaggcccataccttggggtggtccagttccattgagtggtttgcacaccccaaggtcggaccctg 28425946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 21190934 - 21190982
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaagg 113  Q
    |||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  21190934 cataccttggggaggcccagctccattgagctgtttgcaccccccaagg 21190982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 30175577 - 30175529
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaagg 113  Q
    |||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  30175577 cataccttggggaggcccagctccattgagctgtttgcaccccccaagg 30175529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 20611562 - 20611501
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgctt 126  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20611562 cataccttagggaggcccagctccattgagctctttgcacaccccaaggtccgaccctgctt 20611501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 4036870 - 4036779
Alignment:
Q  37 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgcttataa 130  Q
    |||| ||||||||||  ||||||| |||||||| |||| |||| ||| |||||||||||  |||||||||||||||||||||||||||| ||||    
T  4036870 actgggctataattt--tttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaaggtccgaccctgctcataa 4036779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 39135042 - 39135133
Alignment:
Q  37 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgcttat 128  Q
    |||| ||||||||||  ||||||| || |||||||||| |||| |||| ||||||||||||||||||||||||||||| || ||||| ||||    
T  39135042 actgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctgattat 39135133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 5128255 - 5128303
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaagg 113  Q
    |||| |||||||||| |||||||||||||||| ||| ||| ||||||||    
T  5128255 catatcttggagaggcccagctccattgagctgtttacaccccccaagg 5128303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 22315787 - 22315879
Alignment:
Q  37 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgcttata 129  Q
    |||| ||||||||||  ||| ||| ||||||||||||| ||||||||||||||||||||| ||||||| ||| |||| |||| ||||| ||||    
T  22315787 actgggctataattttttttatgaggctcataccttggggaggtccagctccattgagctgtttgcaccccctaagggccgagcctgcatata 22315879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 22077030 - 22076987
Alignment:
Q  81 ccagctccattgagctctttgcacaccccaaggtccgaccctgc 124  Q
    |||||||||||||||  |||||||||||||||||||| ||||||    
T  22077030 ccagctccattgagcggtttgcacaccccaaggtccggccctgc 22076987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 36363218 - 36363265
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaag 112  Q
    |||||||||||||||  ||||||||||||||||||||  |||||||||    
T  36363218 cataccttggagaggctcagctccattgagctctttgtccaccccaag 36363265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 24404256 - 24404209
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaagg 113  Q
    |||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  24404256 cataccttggggaggcccagctccattgagctgtttgcac-ccccaagg 24404209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 36118806 - 36118858
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccg 117  Q
    |||||||||||||||   ||||||||||||||||||| ||||| ||| |||||    
T  36118806 cataccttggagaggcgtagctccattgagctctttgtacacctcaaagtccg 36118858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 7398214 - 7398159
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgacc 120  Q
    |||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||    
T  7398214 cataccttggggaggctcagctccattgagctcgttgcacaccccaaggtccgacc 7398159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 26918029 - 26918091
Alignment:
Q  63 ctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgct 125  Q
    |||||||||| |||| | |||||||||||||||||||||||||||| ||  ||||||||||||    
T  26918029 ctcataccttagagatgcccagctccattgagctctttgcacaccctaaaatccgaccctgct 26918091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 20152969 - 20152915
Alignment:
Q  54 tttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccc 108  Q
    ||||||| | ||||||||| ||||||  |||||||||||||||||||||||||||    
T  20152969 tttttgaagttcataccttagagaggctcagctccattgagctctttgcacaccc 20152915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 27237776 - 27237823
Alignment:
Q  76 gaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||| ||| ||||||||||||||||||||||||||| ||||| |||||    
T  27237776 gaggcccaactccattgagctctttgcacaccccaaagtccggccctg 27237823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 36903643 - 36903681
Alignment:
Q  66 ataccttggagaggtccagctccattgagctctttgcac 104  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  36903643 ataccttggagaggcccagctcaattgagctctttgcac 36903681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 12419833 - 12419893
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgct 125  Q
    |||||||||| |||| || | |||||||| ||| ||||| ||||||||||||| |||||||    
T  12419833 cataccttggtgaggcccggttccattgaactccttgcagaccccaaggtccggccctgct 12419893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 38009489 - 38009547
Alignment:
Q  64 tcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccct 122  Q
    ||||||||||| ||||  ||||||||||||||||||| |||||||||||||||| ||||    
T  38009489 tcataccttggggaggctcagctccattgagctctttacacaccccaaggtccggccct 38009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 15078503 - 15078456
Alignment:
Q  76 gaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||    
T  15078503 gaggtccaactccattgagctctttgcgtaccccaaggtccgaccctg 15078456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 5973369 - 5973429
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgct 125  Q
    |||||||||| |||| |||||||||||||||  |||||| ||||||||||| | |||||||    
T  5973369 cataccttggggaggcccagctccattgagcggtttgcagaccccaaggtctggccctgct 5973429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 41063116 - 41063077
Alignment:
Q  81 ccagctccattgagctctttgcacaccccaaggtccgacc 120  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  41063116 ccagctccattgagcggtttgcacaccccaaggtccgacc 41063077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 7944774 - 7944832
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||||||||| || | |||| |||||||| |  ||||||||||||||||||||||||||    
T  7944774 cataccttggggaagcccagttccattgaacggtttgcacaccccaaggtccgaccctg 7944832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 39332586 - 39332640
Alignment:
Q  69 ccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||||| || |||||| ||||||||||  |||||||| |||||||||||||||||    
T  39332586 ccttggggatgtccagttccattgagcggtttgcacatcccaaggtccgaccctg 39332640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 5721506 - 5721437
Alignment:
Q  42 gctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaa 111  Q
    ||||||||||  ||||||| || ||| |||||| |||| |||| ||||||||||  ||||||||||||||    
T  5721506 gctataattttttttttgaggcccatgccttggggaggcccagttccattgagcggtttgcacaccccaa 5721437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 25562042 - 25562079
Alignment:
Q  86 tccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  25562042 tccattgagctccttgcacaccccaaggtccggccctg 25562079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 8646000 - 8645920
Alignment:
Q  37 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccg 117  Q
    |||||| ||||||||  ||||| | |||||||| |||  ||||  ||| |||||||||||| ||||||||| |||||||||    
T  8646000 actgagttataattttttttttaaagctcatactttgaggaggctcagttccattgagctccttgcacaccacaaggtccg 8645920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 1099 - 1052
Alignment:
Q  76 gaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||    
T  1099 gaggtccaactccattgagctctttgcgtaccccaaggtccgaccctg 1052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 1366852 - 1366898
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaa 111  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||||    
T  1366852 catatcttggagaggcccagctccattgagctctttgctcaccccaa 1366898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 24395503 - 24395445
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||||||||| |||| | |||||||||||||||||||||| ||| |||||||| |||||    
T  24395503 cataccttggggaggcctagctccattgagctctttgcacgccctaaggtccggccctg 24395445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 4931860 - 4931921
Alignment:
Q  43 ctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcac 104  Q
    |||||||||  ||| ||| || |||||||||| ||||||||||||||||||||| |||||||    
T  4931860 ctataattttttttatgaggcgcataccttggggaggtccagctccattgagctatttgcac 4931921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 11242659 - 11242718
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgc 124  Q
    ||||||||||||||| | || |||||||| ||| ||||||||| ||||||||| ||||||    
T  11242659 cataccttggagaggccaagttccattgaactccttgcacacctcaaggtccggccctgc 11242718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 15639215 - 15639157
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||||||||| ||| ||||| |||||||||||| ||||||||| |||||| || |||||    
T  15639215 cataccttggggagctccagttccattgagctccttgcacacctcaaggtacggccctg 15639157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 28689806 - 28689864
Alignment:
Q  65 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 123  Q
    |||||||||| || |||| | ||||||||||||||||||||||| ||| ||||||||||    
T  28689806 cataccttggggatgtccggttccattgagctctttgcacaccctaagatccgaccctg 28689864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University