View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4283_low_2 (Length: 540)
Name: NF4283_low_2
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 17323541 - 17323115
Alignment:
| Q |
16 |
aaattatctggtgatgcttactaaaaaccttgaaatatactctgtaagttttagattcaattcacctatactagtttaacttcattaaaagaaaaa--ca |
113 |
Q |
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| T |
17323541 |
aaattatctgatgatgcttactagaaaccttaaaatatattccgtaagttttagattcaattctccgatactagtttaacttcataaaaaaaaaaaaaca |
17323442 |
T |
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| Q |
114 |
agaagtgcaaatctaattctaaaattttaagtaattctttccatattcattggcactatttattatttttaaaaaggtcgttttccaattaagagtgctt |
213 |
Q |
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| T |
17323441 |
agaagtgcaaatctaattctaaaattttaactaattctttccatattcattggcactatttattatttttataaaggtcgttttccaattaagagtgctt |
17323342 |
T |
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| Q |
214 |
tttggttggattttaagaagtgaatgtggatgtttgacaacgtgtgaaaagataagtgtgtctatgtggagtctaattgcgatgtgtggatagttgaaag |
313 |
Q |
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| T |
17323341 |
tttggttggagatttagaagtgaatgtggatgtttgacaacgtgtgaaaagataagtgtgtctatgtggatactaattgcgatgtgtggatagttgaaag |
17323242 |
T |
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| Q |
314 |
ccttttacttttctaacttattggataatcnnnnnnngtccaccctaattttcttcccttctagaaccaaaggacggcacgacaatcactacaattaatt |
413 |
Q |
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| T |
17323241 |
ccttttacttttctaacttattggataatctttttttgtccaccctaattttcttcccttctagaaccaaaggacggcacggcaataactacgattaatt |
17323142 |
T |
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| Q |
414 |
attattgtcatcatttgtttaatgttt |
440 |
Q |
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| T |
17323141 |
attattgtcatcatttgtttaatgttt |
17323115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 458 - 534
Target Start/End: Complemental strand, 17323129 - 17323053
Alignment:
| Q |
458 |
atttgtttaatgtatatggatatttagatttaattgtaaaagtaaaaaagcttggatataagttgtagtataattta |
534 |
Q |
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| T |
17323129 |
atttgtttaatgtttatggatatttagatttaattgtaaaagtaaaaaagcttggatataagttgtagtataattta |
17323053 |
T |
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