View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4283_low_4 (Length: 474)
Name: NF4283_low_4
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 39659451 - 39659893
Alignment:
| Q |
9 |
atcaaaggtttcaaattcatcaactactcaggggtatgttaatcaaggtaggagggttccaaaagaagctgttggtatttcaggtgagttagaaagcatg |
108 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39659451 |
atcaaaggttttaaattcatcaactactgaggggtatgttaatcaaggtaggagggttccaaaagaagctgttggtatttcaggtgagttagaaagcatg |
39659550 |
T |
|
| Q |
109 |
atcaatgatcatcaaaaatccaaaggaagtagtactcttattcgtgcttcgtctggcaatgttatgttgtatggaaatttagggaatcttaggcaaggag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39659551 |
atcaatgatcatcaaaaatccaaaggaagtagtactcttattcgcgcttcgtctggcaatgttatgttgtatggaaatttagggaatcttaggcaaggag |
39659650 |
T |
|
| Q |
209 |
ataaaaataatagttattcaaatgcaatggataattataaccagtattttgaaaatgcaaattcaaatgcaagaggaggacacacaaataatgtgacgag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39659651 |
ataaaaataatagttattcaaatgcaatggataattataaccagtattttgaaaatgcaaattcaaatgcaagaggaggacacacaaataatgtgacgag |
39659750 |
T |
|
| Q |
309 |
tgttcgtaaagaaacaaaatcatccaccaagttgaaggaagaaaaatcaggtggtgggtcactgtggagggctatagcaacgagtatggagcgagagcag |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| || ||||| | ||||||| |
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| T |
39659751 |
tgttcgtaaagaaacaaaatcatccaccaagttgaaggaagaaaaatcaggtggtggttcactttgtagggctatatcaactagaatggatccagagcag |
39659850 |
T |
|
| Q |
409 |
tggaaagtaatgggtaatgaggattataagagtggaatattcg |
451 |
Q |
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| T |
39659851 |
ttgaaaataatggggaatgaggattataagaatggaagattcg |
39659893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 4286352 - 4286033
Alignment:
| Q |
10 |
tcaaaggtttcaaattcatcaactactcaggggtatgttaatcaaggtaggagggttccaaaagaagctgttggtatttcaggtgagttagaaagcatga |
109 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||| | || |||||||||||||||| |
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| T |
4286352 |
tcaaaggtttcaaattcatcaactacccatgggtatgttaatcaaggtaggagggttccaagagaagttgttggtatcacgggagagttagaaagcatga |
4286253 |
T |
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| Q |
110 |
tcaatgatcatcaaaaatccaaaggaagtagtactcttattcgtgcttcgtctggcaatgttatgttgtatggaaatttagggaatcttaggcaaggaga |
209 |
Q |
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| T |
4286252 |
ttaatgatcataaaatatccaaag-aagt--------tattcgcgcttcgtctggcaatgctttgttgtatggatatttagggaatcttaggcaaggaga |
4286162 |
T |
|
| Q |
210 |
taaaaataatagttattcaaatgcaatggataattataaccagtattttgaaaatgcaaattcaaatgcaagaggaggacacacaaataatgtgacgagt |
309 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4286161 |
taaagataatagttattcaaatgcaatggataattataacaagtattttgaaaatgcaaattcaaatgcaagaggaggacacacaaataatgtgatgagt |
4286062 |
T |
|
| Q |
310 |
gttcgtaaagaaacaaaatcatccaccaa |
338 |
Q |
| |
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||| || |||||||||||||||||||||| |
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|
| T |
4286061 |
gttagtgaagaaacaaaatcatccaccaa |
4286033 |
T |
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