View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4283_low_5 (Length: 474)
Name: NF4283_low_5
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Original strand, 31903586 - 31904034
Alignment:
| Q |
11 |
catcaataaaaaaccctgaaagattcaaccctctagagaaaaacgatataatatcaaacgcattgaaatccaacggttttccctcttcttccccattatt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903586 |
catcaataaaaaaccctgaaagattcaaccctctagagaaaaacgatataatatcaaacgcattgaaatccaacggttttccctcttcttccccattatt |
31903685 |
T |
|
| Q |
111 |
aaccttcttctcaaattcaaaaccctcctcataaaacttcacctctttatacccttttctaaaccaaggatccctcaaaatctcatcaacagttatcctc |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903686 |
aaccttcttctcaaattcaaaaccctcctcataaaacttcacctctttatacccttttctaaaccaaggatccctcaaaatctcatcaacagttatcctc |
31903785 |
T |
|
| Q |
211 |
gtctccggatttgtatccatcaaccgcgataaaaaccgctttagatccggtgaaaaccaccgcggacacttaaattccccgctatatatcttcctataca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31903786 |
gtctccggatttgtatccatcaaccgcgataaaaaccgctttagatccggtgaaaaccaccgcggacacttaaattccccactatatatcttcctataca |
31903885 |
T |
|
| Q |
311 |
tcaccatcaaatttggatcattaaatggtagataaccagccacaagaacaaacaggataataccacatgaccaaatatccaccttagctccatcataacc |
410 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903886 |
tcaccatcaaatttggatcattaaatggaagataaccagccacaagaacaaacagtataataccacatgaccaaatatccaccttagctccatcataacc |
31903985 |
T |
|
| Q |
411 |
tctcttcgctaaaatctccggtgccacatatgcaggtgttccacaaagc |
459 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31903986 |
tctcttcgctaaaatctccggtgccacatatgcaggtgttccacaaagc |
31904034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 4982692 - 4982573
Alignment:
| Q |
298 |
atcttcctatacatcaccatcaaatttggatcattaaatggtagataaccagccacaagaacaaacaggataataccacatgaccaaatatccaccttag |
397 |
Q |
| |
|
|||||| |||||||| |||| |||||| |||||| || || ||| |||| |||| |||||||| || |||| |||||| ||||||||||| |||| | |
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|
| T |
4982692 |
atcttcttatacatctccattaaatttctatcattgaaaggaagaaaacctgccaatagaacaaagagaataacaccacaagaccaaatatctgccttgg |
4982593 |
T |
|
| Q |
398 |
ctccatcataacctctcttc |
417 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
4982592 |
ctccatcataacctttcttc |
4982573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 457
Target Start/End: Original strand, 4956586 - 4956787
Alignment:
| Q |
256 |
tccggtgaaaaccaccgcggacacttaaattccccgctatatatcttcctatacatcaccatcaaatttggatcattaaatggtagataaccagccacaa |
355 |
Q |
| |
|
|||||||||||||||| |||||| ||| || || | || |||||| ||||||| |||| | |||| |||||| ||| |||| ||||||||||| | |
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| T |
4956586 |
tccggtgaaaaccacctgggacaccgaaactcacccttgtaaatcttcttatacattgccataacattttgatcatgaaaaggtaaataaccagccatca |
4956685 |
T |
|
| Q |
356 |
gaacaaacaggataataccacatgaccaaatatccaccttagctccatcataacctctcttcgctaaaatctccggtgccacatatgcaggtgttccaca |
455 |
Q |
| |
|
|||||||| | || |||||| ||||||| ||| ||||| || |||||||||||| || | || |||| ||| ||||| ||||| ||||| || ||||| |
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|
| T |
4956686 |
aaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccaca |
4956785 |
T |
|
| Q |
456 |
aa |
457 |
Q |
| |
|
|| |
|
|
| T |
4956786 |
aa |
4956787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 458
Target Start/End: Original strand, 27312146 - 27312303
Alignment:
| Q |
301 |
ttcctatacatcaccatcaaatttggatcattaaatggtagataaccagccacaagaacaaacaggataataccacatgaccaaatatccaccttagctc |
400 |
Q |
| |
|
|||| |||||| ||||| |||||| |||||||||| || ||||| || ||| |||| ||||||| | || ||||||||||||| ||| || || || | |
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| T |
27312146 |
ttccgatacataaccattaaattttgatcattaaaaggaagatatcccgccgcaaggacaaacaaaacaacgccacatgaccaaacatcaactttggcac |
27312245 |
T |
|
| Q |
401 |
catcataacctctcttcgctaaaatctccggtgccacatatgcaggtgttccacaaag |
458 |
Q |
| |
|
||||||| |||| ||| || | || ||| |||||||| || ||||| ||||||||||| |
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|
| T |
27312246 |
catcatatcctcgcttagcaagaacctcaggtgccacgtaagcaggggttccacaaag |
27312303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 27279045 - 27278953
Alignment:
| Q |
297 |
tatcttcctatacatcaccatcaaatttggatcattaaatggtagataaccagccacaagaacaaacaggataataccacatgaccaaatatc |
389 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||| ||| || |||||||| |||| | ||||||||| | || ||||| ||||||||||| |
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| T |
27279045 |
tatcttcctatacatctctatcaaatttgagtcatgaaaaggaagataacctgccaataaaacaaacagaactattccacaagaccaaatatc |
27278953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 457
Target Start/End: Complemental strand, 35828247 - 35828115
Alignment:
| Q |
325 |
ggatcattaaatggtagataaccagccacaagaacaaacaggataataccacatgaccaaatatccaccttagctccatcataacctctcttcgctaaaa |
424 |
Q |
| |
|
||||||| ||| |||| ||||||||||| | |||||||| | || ||||| ||||||||||| |||||||| |||||||||||| || | | |||| |
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| T |
35828247 |
ggatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataacctttcctagacaaaa |
35828148 |
T |
|
| Q |
425 |
tctccggtgccacatatgcaggtgttccacaaa |
457 |
Q |
| |
|
||| || || ||||| |||||||| ||||||| |
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|
| T |
35828147 |
cctcaggagcaacataagcaggtgtaccacaaa |
35828115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 27043275 - 27043315
Alignment:
| Q |
189 |
aatctcatcaacagttatcctcgtctccggatttgtatcca |
229 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
27043275 |
aatctcatcaacacttatcctcgtcttgggatttgtatcca |
27043315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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