View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4283_low_6 (Length: 472)

Name: NF4283_low_6
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4283_low_6
NF4283_low_6
[»] chr6 (4 HSPs)
chr6 (388-458)||(30748978-30749048)
chr6 (246-317)||(30748836-30748907)
chr6 (209-273)||(30759060-30759124)
chr6 (388-458)||(30759233-30759303)
[»] chr1 (3 HSPs)
chr1 (230-310)||(37702808-37702888)
chr1 (228-310)||(37663543-37663625)
chr1 (228-310)||(37673269-37673351)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 30748978 - 30749048
Alignment:
Q  388 gaccccctagaccatttagagcatcattggacctaagacccattagatcaccatcatcttgagtacctttg 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748978 gaccccctagaccatttagagcatcattggacctaagacccattagatcaccatcatcttgagtacctttg 30749048  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 30748836 - 30748907
Alignment:
Q  246 aggatttagattcatttggagcatggtccttcatggttggacttgactgcaagaatctctttctttgatgac 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30748836 aggatttagattcatttggagcatggtccttcatggttggacttgactgcaagaatctctttgtttgatgac 30748907  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 30759060 - 30759124
Alignment:
Q  209 agttcatacccctactatgggctcttcaaccacttgaaggatttagattcatttggagcatggtc 273  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30759060 agttcatacccccaccatgggctcttcaaccacttgaaggatttagattcatttggagcatggtc 30759124  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 30759233 - 30759303
Alignment:
Q  388 gaccccctagaccatttagagcatcattggacctaagacccattagatcaccatcatcttgagtacctttg 458  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||| |||| |||||    
T  30759233 gaccccctagaccatttagagcaccattggacctaagacccataagatctccatcagcttcagtatctttg 30759303  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 37702808 - 37702888
Alignment:
Q  230 ctcttcaaccacttgaaggatttagattcatttggagcatggtccttcatggttggacttgactgcaagaatctctttctt 310  Q
    ||||||||||||  |||||||||||||||||||||||  |  | ||||||||||||| |||| ||||| ||||| ||||||    
T  37702808 ctcttcaaccaccagaaggatttagattcatttggagtgtaattcttcatggttggatttgagtgcaataatctttttctt 37702888  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 37663625 - 37663543
Alignment:
Q  228 ggctcttcaaccacttgaaggatttagattcatttggagcatggtccttcatggttggacttgactgcaagaatctctttctt 310  Q
    |||||| |||||||  |||||||||||||||||||||||  |  | ||||||||||||| |||| ||||| ||||| ||||||    
T  37663625 ggctctccaaccaccagaaggatttagattcatttggagtgtaattcttcatggttggatttgagtgcaataatctttttctt 37663543  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 37673351 - 37673269
Alignment:
Q  228 ggctcttcaaccacttgaaggatttagattcatttggagcatggtccttcatggttggacttgactgcaagaatctctttctt 310  Q
    |||||| |||||||  |||||||||||||||||||||||  |  | ||||||||||||| |||| ||||| ||||| ||||||    
T  37673351 ggctctccaaccaccagaaggatttagattcatttggagtgtaattcttcatggttggatttgagtgcaataatctttttctt 37673269  T

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