View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4283_low_7 (Length: 453)

Name: NF4283_low_7
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4283_low_7
NF4283_low_7
[»] chr3 (67 HSPs)
chr3 (48-275)||(3745912-3746139)
chr3 (116-275)||(3754504-3754663)
chr3 (127-275)||(4157943-4158094)
chr3 (114-275)||(4142120-4142284)
chr3 (367-431)||(3756011-3756075)
chr3 (109-221)||(2678380-2678492)
chr3 (121-222)||(803211-803312)
chr3 (114-221)||(2459233-2459340)
chr3 (121-223)||(2696725-2696827)
chr3 (115-221)||(2686299-2686408)
chr3 (127-217)||(956343-956433)
chr3 (114-220)||(1891050-1891156)
chr3 (297-423)||(3745166-3745292)
chr3 (327-432)||(2679196-2679301)
chr3 (327-432)||(2687103-2687208)
chr3 (327-427)||(967863-967963)
chr3 (327-427)||(1891807-1891907)
chr3 (128-178)||(2631358-2631408)
chr3 (303-427)||(955541-955665)
chr3 (324-424)||(2651167-2651267)
chr3 (297-421)||(4158675-4158799)
chr3 (128-179)||(2644362-2644413)
chr3 (128-179)||(2659152-2659203)
chr3 (113-175)||(37757721-37757783)
chr3 (117-178)||(2492083-2492144)
chr3 (327-424)||(7432842-7432939)
chr3 (130-179)||(13498224-13498273)
chr3 (324-424)||(13478816-13478916)
chr3 (128-179)||(754609-754660)
chr3 (130-221)||(968629-968720)
chr3 (304-427)||(1898388-1898511)
chr3 (304-427)||(1907834-1907957)
chr3 (304-427)||(2931126-2931249)
chr3 (128-179)||(37753345-37753396)
chr3 (116-179)||(43991960-43992023)
chr3 (114-216)||(989359-989461)
chr3 (127-217)||(1007423-1007513)
chr3 (127-217)||(1022451-1022541)
chr3 (127-221)||(1936979-1937073)
chr3 (117-179)||(7324420-7324482)
chr3 (127-209)||(7432053-7432135)
chr3 (114-179)||(783785-783850)
chr3 (318-427)||(1937714-1937823)
chr3 (117-178)||(7442966-7443027)
chr3 (130-179)||(9561987-9562036)
chr3 (127-179)||(2442039-2442091)
chr3 (297-421)||(4142865-4142989)
chr3 (339-427)||(9497236-9497324)
chr3 (115-167)||(23234853-23234905)
chr3 (128-167)||(746383-746422)
chr3 (127-186)||(1940578-1940637)
chr3 (29-84)||(2442134-2442189)
chr3 (128-179)||(2456249-2456300)
chr3 (128-179)||(9565829-9565880)
chr3 (381-427)||(1931966-1932012)
chr3 (329-391)||(2441217-2441279)
chr3 (117-179)||(2476634-2476696)
chr3 (132-189)||(997566-997623)
chr3 (132-189)||(1013956-1014013)
chr3 (331-360)||(3756070-3756099)
chr3 (114-179)||(7942485-7942550)
chr3 (128-173)||(9587185-9587230)
chr3 (126-167)||(23197024-23197065)
chr3 (321-398)||(44000819-44000896)
chr3 (296-376)||(988658-988738)
chr3 (324-428)||(1941331-1941435)
chr3 (327-427)||(2697505-2697605)
[»] chr5 (21 HSPs)
chr5 (37-275)||(11081714-11081955)
chr5 (291-427)||(23764979-23765115)
chr5 (291-427)||(23814827-23814963)
chr5 (292-427)||(23774793-23774928)
chr5 (292-427)||(23861746-23861881)
chr5 (291-427)||(23754758-23754894)
chr5 (291-427)||(23820213-23820349)
chr5 (127-189)||(23766861-23766923)
chr5 (127-189)||(23816709-23816771)
chr5 (307-423)||(11081377-11081493)
chr5 (127-181)||(23769645-23769699)
chr5 (127-181)||(23819493-23819547)
chr5 (130-179)||(20292995-20293044)
chr5 (130-179)||(20305856-20305905)
chr5 (130-179)||(20310260-20310309)
chr5 (116-217)||(23861014-23861115)
chr5 (129-181)||(3181715-3181767)
chr5 (297-427)||(1428482-1428612)
chr5 (297-427)||(23691153-23691283)
chr5 (130-179)||(20301443-20301492)
chr5 (116-181)||(23732165-23732230)
[»] chr4 (4 HSPs)
chr4 (296-431)||(22672866-22673001)
chr4 (127-221)||(20019771-20019865)
chr4 (327-427)||(20020548-20020648)
chr4 (127-189)||(20016184-20016247)
[»] chr8 (2 HSPs)
chr8 (303-427)||(19727111-19727235)
chr8 (312-419)||(31145148-31145255)
[»] chr7 (1 HSPs)
chr7 (177-252)||(1078227-1078302)
[»] chr2 (4 HSPs)
chr2 (124-179)||(36577366-36577421)
chr2 (128-180)||(33038159-33038211)
chr2 (114-179)||(7174359-7174424)
chr2 (128-178)||(33020314-33020364)
[»] chr6 (5 HSPs)
chr6 (114-167)||(19119075-19119128)
chr6 (114-167)||(19126369-19126422)
chr6 (324-376)||(4183768-4183820)
chr6 (128-178)||(24417486-24417536)
chr6 (118-174)||(1442098-1442154)
[»] scaffold0044 (1 HSPs)
scaffold0044 (114-169)||(89153-89208)
[»] chr1 (8 HSPs)
chr1 (114-173)||(51381441-51381500)
chr1 (117-174)||(51407548-51407605)
chr1 (317-376)||(51831647-51831706)
chr1 (117-180)||(51858605-51858668)
chr1 (324-398)||(51221953-51222027)
chr1 (117-183)||(51782795-51782861)
chr1 (127-167)||(25609376-25609416)
chr1 (324-376)||(51382202-51382254)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 67)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 48 - 275
Target Start/End: Complemental strand, 3746139 - 3745912
Alignment:
Q  48 cacttgatcatcctaaaaaatatatactgccttggcacgtacatgagaagtagtaagttcccgctcgtaaggaacagtaaacaatttagtccaagactct 147  Q
    ||||||| |||||| ||| ||||||||||| ||||| |||||||||||| ||||  ||||  ||| |||||||| ||| |||||||||||||||||||||    
T  3746139 cacttgaccatcctcaaagatatatactgctttggcgcgtacatgagaattagttggttctggcttgtaaggaatagtcaacaatttagtccaagactct 3746040  T
Q  148 tggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaacacccaaagctgataagtcacacacatctaccc 247  Q
    || ||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||  || |||||||||||||||| ||    
T  3746039 tgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctatcc 3745940  T
Q  248 ctccaaaattagggggtaaaatattttg 275  Q
    |||||| | |||| ||| |||| |||||    
T  3745939 ctccaatactaggaggtgaaatcttttg 3745912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 116 - 275
Target Start/End: Complemental strand, 3754663 - 3754504
Alignment:
Q  116 aaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaac 215  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||||    
T  3754663 aaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaagcaatccctcaaaac 3754564  T
Q  216 acccaaagctgataagtcacacacatctacccctccaaaattagggggtaaaatattttg 275  Q
    || |||||| || | |||||||||||| |||||||| |||||||| ||| |||| |||||    
T  3754563 actcaaagccgacatgtcacacacatccacccctcccaaattaggaggtgaaatcttttg 3754504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 127 - 275
Target Start/End: Original strand, 4157943 - 4158094
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagt---cacgcacaagcaatccctcaaaacacccaaag 223  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||| |||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  4157943 aacaatttagtccaagactctttatttccatattccttcataagccaaacatcataaccagaagtggtcacgcacaagcaatccctcaaaacacccaaag 4158042  T
Q  224 ctgataagtcacacacatctacccctccaaaattagggggtaaaatattttg 275  Q
    | || |||||||||||||| |||||||| |||||||| ||| |||| |||||    
T  4158043 ccgacaagtcacacacatccacccctcccaaattaggaggtgaaatcttttg 4158094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 114 - 275
Target Start/End: Original strand, 4142120 - 4142284
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaa---gtcacgcacaagcaatccctc 210  Q
    |||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||| ||| |||||||| ||||||   |||||||||||||||||||||    
T  4142120 gtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctc 4142219  T
Q  211 aaaacacccaaagctgataagtcacacacatctacccctccaaaattagggggtaaaatattttg 275  Q
    |||||||||||| | || |||||||  ||||| |||||||| |||||||| ||| |||| |||||    
T  4142220 aaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttg 4142284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 3756075 - 3756011
Alignment:
Q  367 ggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgggaagcggc 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3756075 ggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgggaagcggc 3756011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 2678380 - 2678492
Alignment:
Q  109 cgctcgtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccc 208  Q
    ||||||||||||| ||| |||||||||||||| |||||||  ||||||||||  ||||||| ||| ||||||| |||| |||||| |||||||||||||     
T  2678380 cgctcgtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaagtcaagcacaagcaatcct 2678479  T
Q  209 tcaaaacacccaa 221  Q
    |||||||||||||    
T  2678480 tcaaaacacccaa 2678492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 803211 - 803312
Alignment:
Q  121 acagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaacaccca 220  Q
    ||||| ||||| ||||||||||||||||  ||||||||||| ||||||| ||| ||||||| ||||||| ||| |||||||||||||||||| | |||||    
T  803211 acagtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaatcatgcacaagcaatccctcaacataccca 803310  T
Q  221 aa 222  Q
    ||    
T  803311 aa 803312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 2459340 - 2459233
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaa 213  Q
    ||||| ||| ||||||||||| |||||||||||||  ||||||||||||||||||||||| ||| ||| ||||||| | | | |||||||||| |||||     
T  2459340 gtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccagaaattatggacaagcaatcactcaat 2459241  T
Q  214 acacccaa 221  Q
    ||||||||    
T  2459240 acacccaa 2459233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 2696725 - 2696827
Alignment:
Q  121 acagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaacaccca 220  Q
    ||||| ||||||||| ||||||||||||  ||||||||||||||||||||||| ||||||| | | ||| ||| || |||||||||||| || |||||||    
T  2696725 acagtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcatgatcggaaatcaagcccaagcaatcccttaacacaccca 2696824  T
Q  221 aag 223  Q
    |||    
T  2696825 aag 2696827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 2686299 - 2686408
Alignment:
Q  115 taaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataat---ccatacatcataaccagaagtcacgcacaagcaatccctca 211  Q
    ||||||| ||| ||||||||| ||||||||||||  ||||||||||||||||||||   ||| ||||||| |||| |  ||| |||||| ||||||||||    
T  2686299 taaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccacagatcaagcacaaacaatccctca 2686398  T
Q  212 aaacacccaa 221  Q
    ||||||||||    
T  2686399 aaacacccaa 2686408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 956433 - 956343
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaacac 217  Q
    |||||||||  |||||||||||  ||||||||||||||||||||||| |||||  ||||| || ||| ||||||||||||||| |||||||    
T  956433 aacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaagcaatccctgaaaacac 956343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 1891050 - 1891156
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaa 213  Q
    ||||| |||| || |||||||||||||||| ||||  ||||||| ||||||||||||||| ||||||| |||| ||  || |||||| |||||||||||     
T  1891050 gtaagaaacactatacaatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgaccaaaaaccaggcacaaacaatccctcaac 1891149  T
Q  214 acaccca 220  Q
    |||||||    
T  1891150 acaccca 1891156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 423
Target Start/End: Complemental strand, 3745292 - 3745166
Alignment:
Q  297 tgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaattt 396  Q
    ||||||||| | || ||||| ||||| || ||||||||||| |||||||| |||||| ||| |||||||| ||  |||||||| |||||||| |  ||||    
T  3745292 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagattt 3745193  T
Q  397 ctagaatgacatcgaaaggaagagtgg 423  Q
    || ||||||| ||| ||||||||||||    
T  3745192 ctggaatgacgtcggaaggaagagtgg 3745166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 2679196 - 2679301
Alignment:
Q  327 agagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgggaa 426  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| | | |||| |||| || ||| | ||||  |||||||||||||||||||    
T  2679196 agagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgtaacctagacagtatatctgggatgaggtcgaaaggaagagtgggaa 2679295  T
Q  427 gcggct 432  Q
    | ||||    
T  2679296 gtggct 2679301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 2687103 - 2687208
Alignment:
Q  327 agagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgggaa 426  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| ||| |||| |||| || ||| | ||||  ||||||||||| |||||||    
T  2687103 agagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgcaacctagacagtatatctgggatgaggtcgaaaggaagggtgggaa 2687202  T
Q  427 gcggct 432  Q
    | ||||    
T  2687203 ggggct 2687208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 427
Target Start/End: Complemental strand, 967963 - 967863
Alignment:
Q  327 agagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgggaa 426  Q
    ||||||||||| |||||||| |||||| ||| ||| | |||||| || ||||  |||||||| ||||||||| |||||| ||||||||||||||| ||||    
T  967963 agagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagagtcggaa 967864  T
Q  427 g 427  Q
    |    
T  967863 g 967863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 1891807 - 1891907
Alignment:
Q  327 agagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgggaa 426  Q
    ||||||||||| |||||||||||| || |||||||||||||||| ||||| || || |||   |||||||||  ||||| ||| ||||||||||||||||    
T  1891807 agagaattccatgacttgcagacagatcggagttgaaggaggagcttcactggaagtctagttagaatttctgaaatgagatccaaaggaagagtgggaa 1891906  T
Q  427 g 427  Q
    |    
T  1891907 g 1891907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 2631408 - 2631358
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacat 178  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 427
Target Start/End: Complemental strand, 955665 - 955541
Alignment:
Q  303 ttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaa 402  Q
    |||||||||||||  ||||| |||||||||||||| ||||| || || ||| | |||||||||||||| || ||| | |||||||| || ||||||  ||    
T  955665 ttggcgaagttggaatcagagataagagaattccaagacttacaaacgcatcgaagttgaaggaggagctttacctgtagcctacagaggatttctgaaa 955566  T
Q  403 tgacatcgaaaggaagagtgggaag 427  Q
     || ||| ||||||||| |||||||    
T  955565 cgagatcaaaaggaagaatgggaag 955541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 2651167 - 2651267
Alignment:
Q  324 ataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgg 423  Q
    |||||||||||||| | ||||||||||||| | ||||||| |||||| || ||||| | |||||  ||||||||| |||| |  ||||||||||||||||    
T  2651167 ataagagaattccatggcttgcagacacatcgaagttgaaagaggagctttaccggtaacctacgtagaatttcttgaataaggtcgaaaggaagagtgg 2651266  T
Q  424 g 424  Q
    |    
T  2651267 g 2651267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 421
Target Start/End: Original strand, 4158675 - 4158799
Alignment:
Q  297 tgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaattt 396  Q
    ||||| ||| |||| ||||| ||||| || ||||||||||| |||||||| |||||||||| | | |||| ||  || ||||| |||||||| |  ||||    
T  4158675 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacattggaatcggaggatgaactttaccggtagcctacatatgattt 4158774  T
Q  397 ctagaatgacatcgaaaggaagagt 421  Q
    |||||||||| ||| ||||||||||    
T  4158775 ctagaatgacgtcggaaggaagagt 4158799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 2644362 - 2644413
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 2659152 - 2659203
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 37757721 - 37757783
Alignment:
Q  113 cgtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccata 175  Q
    ||||||||||| |  |||| || ||||||||||||| ||||||||||||||||||||||||||    
T  37757721 cgtaaggaacactgtacaacttcgtccaagactctttgtttccatattccttcataatccata 37757783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 2492144 - 2492083
Alignment:
Q  117 aggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacat 178  Q
    ||||||| || |||||||||||||||||||| | |||||||| |||||||||||||| ||||    
T  2492144 aggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 424
Target Start/End: Original strand, 7432842 - 7432939
Alignment:
Q  327 agagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtggg 424  Q
    ||||||||||| ||||||||||  ||| | | ||||||||| || |||||||| |||||| | || ||||||  ||||| ||||||||||||||||||    
T  7432842 agagaattccacgacttgcagatgcatcgcaattgaaggagaagcttcaccggaagcctagagagtatttctgtaatgagatcgaaaggaagagtggg 7432939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  130 aatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 13478916 - 13478816
Alignment:
Q  324 ataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgg 423  Q
    |||| |||||||||  |||| | ||||||| | |||||||||||||| ||||| || |||||||| |||||||||| |||||  |||| ||||||| |||    
T  13478916 ataaaagaattccacaacttactgacacatcgaagttgaaggaggagcttcacgggtagcctacatagaatttctataatgaggtcgagaggaagaatgg 13478817  T
Q  424 g 424  Q
    |    
T  13478816 g 13478816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 754609 - 754660
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||||| | |||||| |||||||||||||| |||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaacatc 754660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 968720 - 968629
Alignment:
Q  130 aatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaacacccaa 221  Q
    ||||||||||| |||||||  ||||||| ||||||||||| ||| ||||||| |||   | ||| |||||| ||||||||||| ||||||||    
T  968720 aatttagtccatgactctttatttccatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacacccaa 968629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 1898388 - 1898511
Alignment:
Q  304 tggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaat 403  Q
    ||||||| ||||| || || |||||| ||||||| |||||| ||||| ||| ||||||||||||| ||||||| || ||  ||   |||||||||  |||    
T  1898388 tggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgtttcactggaagtgtagttagaatttctgaaat 1898487  T
Q  404 gacatcgaaaggaagagtgggaag 427  Q
    || ||| |||| ||||||||||||    
T  1898488 gagatccaaagtaagagtgggaag 1898511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 1907834 - 1907957
Alignment:
Q  304 tggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaat 403  Q
    ||||||| ||||| || || |||||| ||||||| |||||| ||||| ||| ||||||||||||| ||||||| || ||  ||   |||||||||  |||    
T  1907834 tggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgtttcactggaagtgtagttagaatttctgaaat 1907933  T
Q  404 gacatcgaaaggaagagtgggaag 427  Q
    || ||| |||| ||||||||||||    
T  1907934 gagatccaaagtaagagtgggaag 1907957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 427
Target Start/End: Complemental strand, 2931249 - 2931126
Alignment:
Q  304 tggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaat 403  Q
    ||||||| ||||| || || |||||| ||||||| |||||| ||||| ||| ||||||||||||| ||||||| || || |||   |||||||||  |||    
T  2931249 tggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgtttcactggaagtctagttagaatttctgaaat 2931150  T
Q  404 gacatcgaaaggaagagtgggaag 427  Q
    || ||| |||| || |||||||||    
T  2931149 gagatccaaagtaacagtgggaag 2931126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 37753345 - 37753396
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||| |||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 43992023 - 43991960
Alignment:
Q  116 aaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||| || ||||||| ||||||||||||   ||||||||||||||||||||||| |||||    
T  43992023 aaggaacactatacaatttggtccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 989461 - 989359
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaa 213  Q
    ||||| || ||| ||||||||||||||||||||||  ||||| || || ||||| | ||| ||||||| |||||||   | |||||||||||| ||||||    
T  989461 gtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaaaaatgcacaagcaatctctcaaa 989362  T
Q  214 aca 216  Q
    |||    
T  989361 aca 989359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 1007513 - 1007423
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaacac 217  Q
    |||||||||||||| ||||| |  ||||||||||||||||| | ||| ||||||| |||| ||  ||||  |||||||||||| |||||||    
T  1007513 aacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacac 1007423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 1022541 - 1022451
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaacac 217  Q
    |||||||||||||| ||||| |  ||||||||||||||||| | ||| ||||||| |||| ||  ||||  |||||||||||| |||||||    
T  1022541 aacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacac 1022451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 1936979 - 1937073
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaacacccaa 221  Q
    |||||||||| ||| || ||||  |||  |||||||||||||| ||| |||||||||||| ||  || |||||| ||||||||||| ||||||||    
T  1936979 aacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaatccctcaacacacccaa 1937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 7324420 - 7324482
Alignment:
Q  117 aggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    ||||||| || |||||||||||||||||||||  ||||| || |||||||||||||| |||||    
T  7324420 aggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 7432053 - 7432135
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccct 209  Q
    |||||||||||||| || ||||  |||||||||||||||||| |||| ||||||| ||||| |   | |||||||||||||||    
T  7432053 aacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgaccagcaaggatgcacaagcaatccct 7432135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 783785 - 783850
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    ||||||||||||| ||||||||||||| | || |   ||||||||||||||||||||||| |||||    
T  783785 gtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatc 783850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 427
Target Start/End: Original strand, 1937714 - 1937823
Alignment:
Q  318 tcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaa 417  Q
    |||||||| ||||||||| | |||||||| || ||  ||| |   ||||||||||||||||  |||||| | || |||||| |||||| ||| |||||||    
T  1937714 tcagaaattagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaa 1937813  T
Q  418 gagtgggaag 427  Q
    ||||||||||    
T  1937814 gagtgggaag 1937823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 7442966 - 7443027
Alignment:
Q  117 aggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacat 178  Q
    ||||||| || |||| ||||||||||||||||| |||||||| |||||||| ||||| ||||    
T  7442966 aggaacactatacaacttagtccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 9561987 - 9562036
Alignment:
Q  130 aatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||| |||||||| || ||||||||||| |||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaacatc 9562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 2442091 - 2442039
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    ||||||||||||||||| ||||  |||||||| |||||||||||||| |||||    
T  2442091 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 421
Target Start/End: Original strand, 4142865 - 4142989
Alignment:
Q  297 tgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaattt 396  Q
    ||||| ||| |||| ||||| ||||| || ||||||||||| |||||||| |||||| ||| | |||||| ||  || || || |||||||| |  ||||    
T  4142865 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaactttactggtagcctacatatgattt 4142964  T
Q  397 ctagaatgacatcgaaaggaagagt 421  Q
    || ||||||| ||| ||||||||||    
T  4142965 ctggaatgacgtcggaaggaagagt 4142989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 9497236 - 9497324
Alignment:
Q  339 gacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgggaag 427  Q
    |||||||||||||||  ||||| || ||||||||||||||| | |||||| || |||| | | ||||  |||||||||| |||||||||    
T  9497236 gacttgcagacacatctgagttcaaagaggagtttcaccggtaacctacaaagtatttatggtatgaggtcgaaaggaatagtgggaag 9497324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 23234853 - 23234905
Alignment:
Q  115 taaggaacagtaaacaatttagtccaagactcttggtttccatattccttcat 167  Q
    |||||||||  ||||||||||||||||||||||  |||||||||||| |||||    
T  23234853 taaggaacacgaaacaatttagtccaagactctacgtttccatattctttcat 23234905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 746383 - 746422
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcat 167  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  746383 acaatttagtccaagactcttgatttccatactccttcat 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 1940578 - 1940637
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataacca 186  Q
    |||||||||||||| || ||||| ||||||| ||||||||||| ||| ||||||| ||||    
T  1940578 aacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgacca 1940637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 2442189 - 2442134
Alignment:
Q  29 cccctgtgaacttcaacaacacttgatcatcctaaaaaatatatactgccttggca 84  Q
    ||||||| ||||||||||||||||||||||||| ||| | |||||| | |||||||    
T  2442189 cccctgtcaacttcaacaacacttgatcatcctcaaataaatataccggcttggca 2442134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 2456300 - 2456249
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||| ||||  ||||||||||||||||||| ||| |||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 9565829 - 9565880
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||||| | ||| || |||||||||||||| |||||    
T  9565829 acaatttagtccaagactcttgatctccgtactccttcataatccaaacatc 9565880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 1931966 - 1932012
Alignment:
Q  381 agcctacacagaatttctagaatgacatcgaaaggaagagtgggaag 427  Q
    |||||||| || |||||| |||||| |||||||||||||||||||||    
T  1931966 agcctacagaggatttctggaatgagatcgaaaggaagagtgggaag 1932012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 2441279 - 2441217
Alignment:
Q  329 agaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacag 391  Q
    ||||||||| ||||||||||  ||| |||| ||||||||||| ||||| || |||||||||||    
T  2441279 agaattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctacacag 2441217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 2476696 - 2476634
Alignment:
Q  117 aggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||  |||||||||||||||||||||  |||||||| |  ||||||||||| |||||    
T  2476696 aggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 997623 - 997566
Alignment:
Q  132 tttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaa 189  Q
    |||||||||||||||||  ||||||||||||||||| | ||| ||| ||| |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaa 997566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 1014013 - 1013956
Alignment:
Q  132 tttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaa 189  Q
    |||||||||||||||||  ||||||||||||||||| | ||| ||| ||| |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaa 1013956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 360
Target Start/End: Complemental strand, 3756099 - 3756070
Alignment:
Q  331 aattccaggacttgcagacacattggagtt 360  Q
    ||||||||||||||||||||||||||||||    
T  3756099 aattccaggacttgcagacacattggagtt 3756070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 7942550 - 7942485
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||| |  |||||||| ||||||||||||  || ||||| |||||||||||||| |||||    
T  7942550 gtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 9587185 - 9587230
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatcca 173  Q
    ||||||| ||||||| |||||  |||||||||||||||||||||||    
T  9587185 acaattttgtccaaggctctttatttccatattccttcataatcca 9587230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 23197065 - 23197024
Alignment:
Q  126 aaacaatttagtccaagactcttggtttccatattccttcat 167  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  23197065 aaacaatttagtccaagattcttcatttccatattccttcat 23197024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 398
Target Start/End: Complemental strand, 44000896 - 44000819
Alignment:
Q  321 gaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttct 398  Q
    ||||| ||||| ||||||||||||||||  ||| ||||||| ||||| |  |||||||| | |||||||| |||||||    
T  44000896 gaaattagagatttccaggacttgcagatgcatcggagttgcaggagtatcttcaccggtaacctacacaaaatttct 44000819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 988738 - 988658
Alignment:
Q  296 gtgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcac 376  Q
    ||||||||| ||||| ||||| ||||| || | ||||||||| ||||||||    ||| |||||||||||||||| |||||    
T  988738 gtgcttttttgcgaatttgggatcagagattaaagaattccatgacttgcaagagcatcggagttgaaggaggagcttcac 988658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 428
Target Start/End: Original strand, 1941331 - 1941435
Alignment:
Q  324 ataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgg 423  Q
    |||||||||||||| |||||||| || ||  ||| ||||||||| || ||||| || || ||||| || || |||   |||| ||| |||||||||||||    
T  1941331 ataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaaggaagagtgg 1941430  T
Q  424 gaagc 428  Q
    |||||    
T  1941431 gaagc 1941435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 2697505 - 2697605
Alignment:
Q  327 agagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgggaa 426  Q
    ||||||||||| ||||| ||||| ||| | ||||| ||||| |  ||||| || |||| ||| || |||||| ||||||  || ||||||||||||||||    
T  2697505 agagaattccatgacttacagacgcatcgaagttgtaggagtaacttcactgggagccaacaaagtatttcttgaatgaggtcaaaaggaagagtgggaa 2697604  T
Q  427 g 427  Q
    |    
T  2697605 g 2697605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 37 - 275
Target Start/End: Complemental strand, 11081955 - 11081714
Alignment:
Q  37 aacttcaacaacacttgatcatcctaaaaaatatatactgccttggcacgtacatgagaagtagtaagttcccgctcgtaaggaacagtaaacaatttag 136  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||| |   |||| |    ||| | | || | |  |||||||| ||||||||||||||    
T  11081955 aacttcaacaacacttgatcatcctcaaatatatatactgccttgggaaagacatcacgtttagaaggatctctcatgtaaggaatagtaaacaatttag 11081856  T
Q  137 tccaagactcttggtttccatattccttcataatccatacatcataaccagaa---gtcacgcacaagcaatccctcaaaacacccaaagctgataagtc 233  Q
    ||||||||||||  |||||||| |||||||||| ||| ||||||| || || |   ||||| ||||||||||||||||||||||||||||| || ||||     
T  11081855 tccaagactctttatttccatactccttcataacccaaacatcatcactagtagtcgtcacacacaagcaatccctcaaaacacccaaagccgacaagtt 11081756  T
Q  234 acacacatctacccctccaaaattagggggtaaaatattttg 275  Q
    || |||||| |||||| | |||||||| ||| |||| |||||    
T  11081755 acgcacatccaccccttccaaattaggaggtgaaatcttttg 11081714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 427
Target Start/End: Original strand, 23764979 - 23765115
Alignment:
Q  291 cgaaagtgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacaca 390  Q
    ||||||||||| |||||||| ||||| |||||||| |||||||||||  ||||||| |||||| | | ||| | |||| ||||||| || |||||| | |    
T  23764979 cgaaagtgcttcttggcgaatttgggatcagaaattagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacagggagcctataga 23765078  T
Q  391 gaatttctagaatgacatcgaaaggaagagtgggaag 427  Q
    |||||||| |||||| ||||||||||| |||||||||    
T  23765079 gaatttctggaatgagatcgaaaggaatagtgggaag 23765115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 427
Target Start/End: Original strand, 23814827 - 23814963
Alignment:
Q  291 cgaaagtgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacaca 390  Q
    ||||||||||| |||||||| ||||| |||||||| |||||||||||  ||||||| |||||| | | ||| | |||| ||||||| || |||||| | |    
T  23814827 cgaaagtgcttcttggcgaatttgggatcagaaattagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacagggagcctataga 23814926  T
Q  391 gaatttctagaatgacatcgaaaggaagagtgggaag 427  Q
    |||||||| |||||| ||||||||||| |||||||||    
T  23814927 gaatttctggaatgagatcgaaaggaatagtgggaag 23814963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 427
Target Start/End: Original strand, 23774793 - 23774928
Alignment:
Q  292 gaaagtgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacag 391  Q
    |||||||||| |||||||| ||||| |||||||| |||||||||||  ||||||| |||||| | | ||| | |||| ||||||| || ||||||   ||    
T  23774793 gaaagtgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacggggagcctatggag 23774892  T
Q  392 aatttctagaatgacatcgaaaggaagagtgggaag 427  Q
    ||||||| |||||| ||||||||||| |||||||||    
T  23774893 aatttctggaatgagatcgaaaggaatagtgggaag 23774928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 427
Target Start/End: Original strand, 23861746 - 23861881
Alignment:
Q  292 gaaagtgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacag 391  Q
    |||||||||| |||||||| ||||| |||||||| |||||||||||  ||||||| |||||| | | ||| | |||| ||||||| || ||||||   ||    
T  23861746 gaaagtgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacggggagcctatggag 23861845  T
Q  392 aatttctagaatgacatcgaaaggaagagtgggaag 427  Q
    ||||||| |||||| ||||||||||| |||||||||    
T  23861846 aatttctggaatgagatcgaaaggaatagtgggaag 23861881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 291 - 427
Target Start/End: Original strand, 23754758 - 23754894
Alignment:
Q  291 cgaaagtgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacaca 390  Q
    ||||||||||| |||||||| ||||| |||||||| |||||||||||  ||||||| |||||| | | ||| | |||  ||||||| || ||||||   |    
T  23754758 cgaaagtgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcgaaattgcatgagaggtttcacggggagcctatgga 23754857  T
Q  391 gaatttctagaatgacatcgaaaggaagagtgggaag 427  Q
    |||||||| |||||| ||||||||||| |||||||||    
T  23754858 gaatttctggaatgagatcgaaaggaatagtgggaag 23754894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 291 - 427
Target Start/End: Original strand, 23820213 - 23820349
Alignment:
Q  291 cgaaagtgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacaca 390  Q
    ||||||||||| |||||||| ||||| |||||||| |||||||||||  ||||||| |||||| | | ||| | |||  ||||||| || ||||||   |    
T  23820213 cgaaagtgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcgaaattgcatgagaggtttcacggggagcctatgga 23820312  T
Q  391 gaatttctagaatgacatcgaaaggaagagtgggaag 427  Q
    |||||||| |||||| ||||||||||| |||||||||    
T  23820313 gaatttctggaatgagatcgaaaggaatagtgggaag 23820349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 23766861 - 23766923
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaa 189  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||| |||||||    
T  23766861 aacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaa 23766923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 23816709 - 23816771
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaa 189  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||| |||||||    
T  23816709 aacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaa 23816771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 423
Target Start/End: Complemental strand, 11081493 - 11081377
Alignment:
Q  307 cgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgac 406  Q
    |||| ||||| ||||| || | |||||| || |||||||| |||||||||| | |||||| ||  || ||||| | |||||| || |||||||||||||     
T  11081493 cgaatttgggatcagatattaaagaatttcacgacttgcaaacacattggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgag 11081394  T
Q  407 atcgaaaggaagagtgg 423  Q
    |||| ||||||||||||    
T  11081393 atcggaaggaagagtgg 11081377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 23769645 - 23769699
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcat 181  Q
    |||||||||||||||||| |||  || |||||||||||||||||||| |||||||    
T  23769645 aacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23769699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 23819493 - 23819547
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcat 181  Q
    |||||||||||||||||| |||  || |||||||||||||||||||| |||||||    
T  23819493 aacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23819547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  130 aatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||   |||||||||||||||||||||| |||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  130 aatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||   |||||||||||||||||||||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  130 aatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||   |||||||||||||||||||||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 23861014 - 23861115
Alignment:
Q  116 aaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaac 215  Q
    |||||| ||| |||||||||||||||||| |||   | |||||||||||||| ||||| ||||||| || |||| ||  |||||| |||| ||| |||||    
T  23861014 aaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcctgaaaac 23861113  T
Q  216 ac 217  Q
    ||    
T  23861114 ac 23861115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 3181767 - 3181715
Alignment:
Q  129 caatttagtccaagactcttggtttccatattccttcataatccatacatcat 181  Q
    ||||||| ||||||||||||  ||||||||||||||||||| ||| |||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcat 3181715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 427
Target Start/End: Original strand, 1428482 - 1428612
Alignment:
Q  297 tgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaattt 396  Q
    ||||| |||||||| ||| | ||||  || |||||||| || | |||||| |  ||| |||||||||||||||||||||| || ||||||   || ||||    
T  1428482 tgcttcttggcgaatttgagatcagtgattagagaattacatgccttgcaaaggcatcggagttgaaggaggagtttcacgggtagcctatggaggattt 1428581  T
Q  397 ctagaatgacatcgaaaggaagagtgggaag 427  Q
     |  |||||  ||||||||||||||||||||    
T  1428582 gtgaaatgatgtcgaaaggaagagtgggaag 1428612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 427
Target Start/End: Complemental strand, 23691283 - 23691153
Alignment:
Q  297 tgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaattt 396  Q
    ||||| |||||||| ||||| |||||||| |||||||||||   |||||| |||||| | | ||| | |||| |||||||||| |||||    |||||||    
T  23691283 tgcttcttggcgaatttgggatcagaaattagagaattccacagcttgcacacacatcgaaattgcatgaggggtttcaccggaagcctgtggagaattt 23691184  T
Q  397 ctagaatgacatcgaaaggaagagtgggaag 427  Q
     | |||||| |||| |||||| ||| |||||    
T  23691183 atggaatgagatcgcaaggaatagttggaag 23691153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  130 aatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||||||||||   || ||||||||||||||||||| |||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 23732230 - 23732165
Alignment:
Q  116 aaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcat 181  Q
    |||||| ||| |||| |||| |||||||| |||  || |||||||||||||||||||| |||||||    
T  23732230 aaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcat 23732165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 22672866 - 22673001
Alignment:
Q  296 gtgctttttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatt 395  Q
    |||||| || ||||| ||| | ||||| || ||||||||||| ||||||||| | |||||||| ||||||||||| |||||||| | |||||  || |||    
T  22672866 gtgcttcttagcgaatttgcgatcagagattagagaattccatgacttgcaggcgcattggagctgaaggaggagcttcaccggtaacctactaaggatt 22672965  T
Q  396 tctagaatgacatcgaaaggaagagtgggaagcggc 431  Q
    |||  ||||| ||| ||||||||||| || ||||||    
T  22672966 tcttcaatgagatcaaaaggaagagttggcagcggc 22673001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 20019771 - 20019865
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatccatacatcataaccagaagtcacgcacaagcaatccctcaaaacacccaa 221  Q
    |||||||||||||||||||||||  |||||||||||||||| | ||| ||||||| ||||||| | | ||||||| |||| || || ||||||||    
T  20019771 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacacccaa 20019865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 20020548 - 20020648
Alignment:
Q  327 agagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcgaaaggaagagtgggaa 426  Q
    ||||||||||| || || || |||||| | |||||||||||||| ||||| || | ||||||||||||||||  |||||  |||||||||||| ||||||    
T  20020548 agagaattccatgaattacatacacatcgaagttgaaggaggagcttcactggtaacctacacagaatttcttcaatgaggtcgaaaggaagaatgggaa 20020647  T
Q  427 g 427  Q
    |    
T  20020648 g 20020648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 20016184 - 20016247
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcataatcc-atacatcataaccagaa 189  Q
    |||||||||||||||||||||||  |||||||||||||||| |||| | ||||||| |||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaaacatcattaccagaa 20016247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 427
Target Start/End: Complemental strand, 19727235 - 19727111
Alignment:
Q  303 ttggcgaagttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaa 402  Q
    |||||||| ||| | ||||| || ||||||||| | |||||||| |||||| |||  || | ||||| |||||| || |||||||  ||||||||| |||    
T  19727235 ttggcgaatttgtgatcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaatttctggaa 19727136  T
Q  403 tgacatcgaaaggaagagtgggaag 427  Q
    ||| ||||||||||||||| |||||    
T  19727135 tgagatcgaaaggaagagtaggaag 19727111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 419
Target Start/End: Original strand, 31145148 - 31145255
Alignment:
Q  312 ttgggttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttctagaatgacatcga 411  Q
    ||||| ||||| |||||||||||||| |||||||| ||||| |||| ||| | ||||| |||||| || || ||||| || || |||  ||||| |||||    
T  31145148 ttgggatcagatataagagaattccatgacttgcaaacacactggaattgtatgaggaatttcacagggagtctacagaggatatctgtaatgagatcga 31145247  T
Q  412 aaggaaga 419  Q
    ||||||||    
T  31145248 aaggaaga 31145255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 1078227 - 1078302
Alignment:
Q  177 atcataaccagaagtcacgcacaagcaatccctcaaaacacccaaagctgataagtcacacacatctacccctcca 252  Q
    ||||| || ||||| || |||||||||||||||||| |||||||| ||| | |||| |||||||||||||||||||    
T  1078227 atcatcacgagaagccaggcacaagcaatccctcaacacacccaaggctaagaagtgacacacatctacccctcca 1078302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 36577421 - 36577366
Alignment:
Q  124 gtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||| |||||    
T  36577421 gtaaacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 33038211 - 33038159
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacatca 180  Q
    ||||| |||||||||||| || |||||||||||||||||||||||| ||||||    
T  33038211 acaatctagtccaagactttttgtttccatattccttcataatccaaacatca 33038159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 7174359 - 7174424
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatc 179  Q
    ||||||||||   |||||| |||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  7174359 gtaaggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 33020364 - 33020314
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacat 178  Q
    ||||| |||||||||||| ||  ||||||||||||||||||||||| ||||    
T  33020364 acaatctagtccaagactttttatttccatattccttcataatccacacat 33020314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 19119128 - 19119075
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcat 167  Q
    ||||||||||  |||||||||||||||||||||||  |||||||||||||||||    
T  19119128 gtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcat 19119075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 19126422 - 19126369
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcat 167  Q
    ||||||||||  |||||||||||||||||||||||  |||||||||||||||||    
T  19126422 gtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcat 19126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 4183768 - 4183820
Alignment:
Q  324 ataagagaattccaggacttgcagacacattggagttgaaggaggagtttcac 376  Q
    ||||||||||||||||||||||| || ||  |||||||||||||| |||||||    
T  4183768 ataagagaattccaggacttgcaaacgcaacggagttgaaggaggtgtttcac 4183820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 24417486 - 24417536
Alignment:
Q  128 acaatttagtccaagactcttggtttccatattccttcataatccatacat 178  Q
    |||||||||||||||| ||||  ||||||||||| ||||||||||| ||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 1442098 - 1442154
Alignment:
Q  118 ggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccat 174  Q
    |||||||| ||||||||||||||||| ||||   ||||||| |||||||||| ||||    
T  1442098 ggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccat 1442154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 89208 - 89153
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataa 169  Q
    |||||||||| |  |||||||||||||||||||||  |||||||||||||||||||    
T  89208 gtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataa 89153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 51381441 - 51381500
Alignment:
Q  114 gtaaggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatcca 173  Q
    |||||||| | | ||||||||||||||||||||||  ||||||||||| |||||||||||    
T  51381441 gtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatcca 51381500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 51407548 - 51407605
Alignment:
Q  117 aggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccat 174  Q
    ||||||| | ||||||||||||||||||| ||  || |||||||||||||||||||||    
T  51407548 aggaacacttaacaatttagtccaagactgttcattcccatattccttcataatccat 51407605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 51831706 - 51831647
Alignment:
Q  317 ttcagaaataagagaattccaggacttgcagacacattggagttgaaggaggagtttcac 376  Q
    |||||| |||||||| ||||| ||||||||||||||  ||||||||||||| | ||||||    
T  51831706 ttcagagataagagagttccatgacttgcagacacaacggagttgaaggagaaatttcac 51831647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 51858668 - 51858605
Alignment:
Q  117 aggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatca 180  Q
    ||||||| | ||||||||||||||||| |||   ||||||||||||||||| ||||| ||||||    
T  51858668 aggaacacttaacaatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 398
Target Start/End: Original strand, 51221953 - 51222027
Alignment:
Q  324 ataagagaattccaggacttgcagacacattggagttgaaggaggagtttcaccggcagcctacacagaatttct 398  Q
    |||||||||||||| ||||||||||  ||  ||||||||| |||| ||||||| |||||||  ||||| ||||||    
T  51221953 ataagagaattccatgacttgcagatgcagcggagttgaatgaggtgtttcacgggcagccggcacaggatttct 51222027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 51782861 - 51782795
Alignment:
Q  117 aggaacagtaaacaatttagtccaagactcttggtttccatattccttcataatccatacatcataa 183  Q
    ||||||| | || |||||| ||||||| | ||  ||||||||||||||||||||||| |||||||||    
T  51782861 aggaacacttaataatttattccaagattgttcatttccatattccttcataatccaaacatcataa 51782795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 25609376 - 25609416
Alignment:
Q  127 aacaatttagtccaagactcttggtttccatattccttcat 167  Q
    |||||||||||||||||||||||  || |||||||||||||    
T  25609376 aacaatttagtccaagactcttgaatttcatattccttcat 25609416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 51382202 - 51382254
Alignment:
Q  324 ataagagaattccaggacttgcagacacattggagttgaaggaggagtttcac 376  Q
    |||||| ||||||| ||||||||||| ||  |||||||||||||| |||||||    
T  51382202 ataagataattccatgacttgcagacgcaacggagttgaaggaggtgtttcac 51382254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University