View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4283_low_9 (Length: 367)
Name: NF4283_low_9
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 1324889 - 1324601
Alignment:
| Q |
17 |
cataacaacaatatgtaagttgcacgttcactgttaacaaagctaatgtaatgttgagaagccacaccattgaatatcataaccaagataaactcaagac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1324889 |
cataacaacaatatgtaagttgcacgttcactgttaacaaagataatgtaatgttgagaagctacaccattgaatatcataaccaagataaactcaagac |
1324790 |
T |
|
| Q |
117 |
tcccacaactaggcaaggcaaagaaagtgttgtggaggtgacgaagtagcaatagagaccttctatgccgtagaaaaatagatggaaaaatcctaggata |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1324789 |
tcccacaactaggcaa-----agaaagtgttgtggaggtgacgaagtagcaatagagaccttctatgccgtagaaaaatagatggacaaatcctaggata |
1324695 |
T |
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| Q |
217 |
tcatctttcaccaattttttctccactattgatgggtactcaatacacaccaacgtcccagcaatgacatgtaggtagaaagtgagaagcctca |
310 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1324694 |
tcatctttcaccaattctttctccactattgatgggtactcaacacacaccaacgtcccagcaatgacatgtaggtagaaagtgagaagcctca |
1324601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 1328735 - 1328447
Alignment:
| Q |
17 |
cataacaacaatatgtaagttgcacgttcactgttaacaaagctaatgtaatgttgagaagccacaccattgaatatcataaccaagataaactcaagac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1328735 |
cataacaacaatatgtaagttgcacgttcactgttaacaaagataatgtaatgttgagaagctacaccattgaatatcataaccaagataaactcaagac |
1328636 |
T |
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| Q |
117 |
tcccacaactaggcaaggcaaagaaagtgttgtggaggtgacgaagtagcaatagagaccttctatgccgtagaaaaatagatggaaaaatcctaggata |
216 |
Q |
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| T |
1328635 |
tcccacaactaggcaa-----agaaagtgttgtggaggtgatgaagtagcaatagagaccttctatgccgtagaaaaatagatggacaaatcctaggata |
1328541 |
T |
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| Q |
217 |
tcatctttcaccaattttttctccactattgatgggtactcaatacacaccaacgtcccagcaatgacatgtaggtagaaagtgagaagcctca |
310 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328540 |
tcatctttcaccaattctttctccactattgatgggtactcaacacacaccaacgtcccagcaatgacatgtaggtagaaagtgagaagcctca |
1328447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 1329499 - 1329198
Alignment:
| Q |
17 |
cataacaacaatatgtaagttgcacgttcactgttaacaaagctaatgtaatgttgagaagccacaccattgaatatcataaccaagataaactcaagac |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |
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| T |
1329499 |
cataacaacaatatgtaagttgcacgttcacggttaacaaagttaatgtaatgttgagaagctacaccattgaatatcataattaagataaattcaagac |
1329400 |
T |
|
| Q |
117 |
tcccacaactaggcaaggcaaagaaagtgttgtggaggtgacgaagtagcaatagagaccttctatgccgtagaaaaatagatggaaaaatcctaggata |
216 |
Q |
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|||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
1329399 |
tcccacaatt-----aggcaaagaaagtgttgtggaggtgacaaagtagcaatagagaccttctatgctctagaaaaatagatggacaaatcctaggata |
1329305 |
T |
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| Q |
217 |
tcatctttcaccaattttttctccactattgatgggtactcaatacacaccaacgtcccagcaatgacatgtaggtagaaagtgagaagcctcacttctt |
316 |
Q |
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|| || |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1329304 |
tc------------ttctttctccactattgatgggtactcaacacacaccaacgtcccaacaatgacatgtaggtagaaagtgagaagcctcacttctt |
1329217 |
T |
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| Q |
317 |
tcatcttctcctagtaaat |
335 |
Q |
| |
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||||||||||| ||||||| |
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| T |
1329216 |
tcatcttctcccagtaaat |
1329198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 148 - 335
Target Start/End: Complemental strand, 1323362 - 1323175
Alignment:
| Q |
148 |
gtggaggtgacgaagtagcaatagagaccttctatgccgtagaaaaatagatggaaaaatcctaggatatcatctttcaccaattttttctccactattg |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1323362 |
gtggaggtgacgaagtagcaatagagaccttctatgccgtagaaaaatagatggacaaatcctaggatatcatctttcaccaattctttctccactattg |
1323263 |
T |
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| Q |
248 |
atgggtactcaatacacaccaacgtcccagcaatgacatgtaggtagaaagtgagaagcctcacttctttcatcttctcctagtaaat |
335 |
Q |
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| T |
1323262 |
atgggtactcaacacacaccaacgttccagcaatgacatgtaggtagaaagtgagaagcctcacttcttttatcttctcccagtaaat |
1323175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 60 - 334
Target Start/End: Original strand, 1753235 - 1753504
Alignment:
| Q |
60 |
taatgtaatgttgagaagccacaccattgaatatcataaccaagataaactcaagactcccacaactaggcaaggcaaagaaagtgttgtggaggtgacg |
159 |
Q |
| |
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|||||||||||||||| | || || ||||| ||||||| |||||| | ||||||| |||||||| ||||||||||||| ||||||||||| |
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| T |
1753235 |
taatgtaatgttgagacgaaaccccgttgaagatcataatcaagatgtattcaagacaaccacaact-----tggcaaagaaagtgctgtggaggtgata |
1753329 |
T |
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| Q |
160 |
aagtagcaatagagaccttctatgccgtagaaaaatagatggaaaaatcctaggatatcatctttcaccaattttttctccactattgatgggtactcaa |
259 |
Q |
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||||| ||||| | ||||||||| | || ||||||| ||| | |||||| || |||| ||||| |||||| |||||||||| |||| || ||||||| |
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| T |
1753330 |
aagtaacaatataatccttctatggcataaaaaaatacatgaacaaatccaagaatatgatcttctaccaatgctttctccacttttgagggatactcaa |
1753429 |
T |
|
| Q |
260 |
tacacaccaacgtcccagcaatgacatgtaggtagaaagtgagaagcctcacttctttcatcttctcctagtaaa |
334 |
Q |
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||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1753430 |
cacaaaccaaggttccagcaataacatgcaggtagaaagtgagaagcctcacttctttcatcttctcccagtaaa |
1753504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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