View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4284-Insertion-17 (Length: 139)

Name: NF4284-Insertion-17
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4284-Insertion-17
NF4284-Insertion-17
[»] chr8 (2 HSPs)
chr8 (82-139)||(7935038-7935095)
chr8 (82-139)||(34578588-34578645)
[»] chr2 (3 HSPs)
chr2 (82-139)||(45623241-45623296)
chr2 (89-139)||(9809473-9809522)
chr2 (89-139)||(16248459-16248507)
[»] chr7 (1 HSPs)
chr7 (98-139)||(27128904-27128945)
[»] chr4 (1 HSPs)
chr4 (89-139)||(31888821-31888869)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 7935038 - 7935095
Alignment:
Q  82 aggatagacttttctttctcccctaattttctcttccctctttgtgtctcaaccttta 139  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7935038 aggatagacttttctctctcccctaattttctcttccctctttgtgtctcaaccttta 7935095  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 34578645 - 34578588
Alignment:
Q  82 aggatagacttttctttctcccctaattttctcttccctctttgtgtctcaaccttta 139  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  34578645 aggatagacttttctctctcccttaattttctcttccctctttgtgtctcaaccttta 34578588  T

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Target: chr2 (Bit Score: 43; Significance: 8e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 45623296 - 45623241
Alignment:
Q  82 aggatagacttttctttctcccctaattttctcttccctctttgtgtctcaaccttta 139  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  45623296 aggatagacttttctctctcccctaattttctcttccctc--tgtgtctcaaccttta 45623241  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 9809522 - 9809473
Alignment:
Q  89 acttttctttctcccctaattttctcttccctctttgtgtctcaaccttta 139  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  9809522 acttttctctctcctctaattttctcttccctc-ttgtgtctcaaccttta 9809473  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 16248507 - 16248459
Alignment:
Q  89 acttttctttctcccctaattttctcttccctctttgtgtctcaaccttta 139  Q
    |||||||| ||||| ||||||||||||||||||  || |||||||||||||    
T  16248507 acttttctctctcctctaattttctcttccctc--tgcgtctcaaccttta 16248459  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 27128904 - 27128945
Alignment:
Q  98 tctcccctaattttctcttccctctttgtgtctcaaccttta 139  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  27128904 tctcctctaattttctctttcctctttgtgtctcaaccttta 27128945  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 31888821 - 31888869
Alignment:
Q  89 acttttctttctcccctaattttctcttccctctttgtgtctcaaccttta 139  Q
    |||||||| ||||| ||||||||||||||||||  || |||||||||||||    
T  31888821 acttttctctctcctctaattttctcttccctc--tgcgtctcaaccttta 31888869  T

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