View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284-Insertion-19 (Length: 122)
Name: NF4284-Insertion-19
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284-Insertion-19 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 5e-63; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 5e-63
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3781401 - 3781280
Alignment:
| Q |
1 |
ccaaccacaatgccttcccaacatttcctcactttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagaca |
100 |
Q |
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| T |
3781401 |
ccaaccacaatgccttcccaacatttcctcactttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagaca |
3781302 |
T |
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| Q |
101 |
ctttcgattttgttcgtccgat |
122 |
Q |
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| T |
3781301 |
ctttcgattttgttcgtccgat |
3781280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 3767417 - 3767299
Alignment:
| Q |
4 |
accacaatgccttcccaacatttcctca---ctttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagaca |
100 |
Q |
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| T |
3767417 |
accataatgccttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagaca |
3767318 |
T |
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| Q |
101 |
ctttcgattttgttcgtcc |
119 |
Q |
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| T |
3767317 |
cagttgattttgttcgtcc |
3767299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 3777082 - 3776970
Alignment:
| Q |
4 |
accacaatgccttcccaacatttcctcactttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagacactt |
103 |
Q |
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| T |
3777082 |
accacaatgtcttccaaacatttcctcactttgttcttcttccttcttatctcttgtaacacactcacttcttcaa---cattagaaaaagaagatacct |
3776986 |
T |
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| Q |
104 |
tcgattttgttcgtcc |
119 |
Q |
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| T |
3776985 |
ttgattttgttcgtcc |
3776970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 3746214 - 3746134
Alignment:
| Q |
4 |
accacaatgccttcccaacatttcctcactttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatca |
87 |
Q |
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| T |
3746214 |
accaccatgcctacccaacacttcctcacttttttcttcttccttctcttctcttgcaacaccctc---acttcaacttcatca |
3746134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 3763000 - 3762895
Alignment:
| Q |
14 |
cttcccaacatttcctcactttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagacactttcgattttgt |
113 |
Q |
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| T |
3763000 |
cttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgattttgt |
3762901 |
T |
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| Q |
114 |
tcgtcc |
119 |
Q |
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|||||| |
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| T |
3762900 |
tcgtcc |
3762895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 3752016 - 3751963
Alignment:
| Q |
19 |
caacatttcctcactttgttcttcttccttctcatatcttgcaacacactcact |
72 |
Q |
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| T |
3752016 |
caacattttctcactttgttcttcttccttctcctctcttgcaacactctcact |
3751963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 3755885 - 3755837
Alignment:
| Q |
17 |
cccaacatttcctcactttgttcttcttccttctcatatcttgcaacac |
65 |
Q |
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| T |
3755885 |
cccaacacttcatcactttgttcttcttccttcttctttcttgcaacac |
3755837 |
T |
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