View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284-Insertion-2 (Length: 181)
Name: NF4284-Insertion-2
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284-Insertion-2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 32824902 - 32824722
Alignment:
| Q |
1 |
ctaaggatatgaaagaaagaaaatattgtatggtgaaagagaaattgagggagttagagatgttggatataagcaatgtggattatgcaatggatattga |
100 |
Q |
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| T |
32824902 |
ctaaggatatgaaagaaagaaaatattgtatggtgaaagagaaattgaaggagttggagatgttggatataagcaatgtggattatgcaatggatattga |
32824803 |
T |
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| Q |
101 |
agaggttctttattactattcaagactaacttgtcctgcttatgttgaaattgtggatagattcttcatggaaatgtactc |
181 |
Q |
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| T |
32824802 |
agaggttctttattactattcaagactaacttgtcctgcttatgttgaaattgtggatagattcttcatggaaatgtactc |
32824722 |
T |
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Target: chr8 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 43565713 - 43565831
Alignment:
| Q |
60 |
atgttggatataagcaatgtggattatgcaatggatattgaagaggttctttattactattcaagactaacttgtcctgcttatgttgaaattgtggata |
159 |
Q |
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| T |
43565713 |
atgttggagatgagtaatgtggattatatattagacattgaagaggttcttcattactattctaggctcacttgtccttcgtatcttgaaattgttgata |
43565812 |
T |
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| Q |
160 |
gattcttcatggaaatgta |
178 |
Q |
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| T |
43565813 |
aattcttcgtggaaatgta |
43565831 |
T |
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