View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284-Insertion-3 (Length: 170)
Name: NF4284-Insertion-3
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 4e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 14281171 - 14281335
Alignment:
| Q |
6 |
gccctctcaccgactatctctccgaccccgacaaaataactcatccactctaccgtttcctcgccaactacattgctacaaaaacctcttccctcaccga |
105 |
Q |
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| T |
14281171 |
gccctctcaccgactatctctccgaccccgacaaaataactcacccactctaccgtttcctcgccaactacattgctacaaaaacctcttccctcaccga |
14281270 |
T |
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| Q |
106 |
agtcgagatagctcgcctcaccaccgccgagataaataacctcatctctcaactccctgaacctg |
170 |
Q |
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| T |
14281271 |
agtcgagatagctcgcctcaccaccgccgagataaataacctcatctctcaactccctgaacctg |
14281335 |
T |
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Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 14288335 - 14288483
Alignment:
| Q |
6 |
gccctctcaccgactatctctccgaccccgacaaaataactcatccactctaccgtttcctcgccaactacattgctacaaaaacctcttccctcaccga |
105 |
Q |
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| T |
14288335 |
gccctctcaccgactctgtcgccgacaccgacgatatagctcagtcgctcttccgctttctcgccaactacattgcaactaaaaccacttccctctctca |
14288434 |
T |
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| Q |
106 |
agtcgagatagctcgcctcaccaccgccgagataaataacctcatctct |
154 |
Q |
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| T |
14288435 |
agtcgagatagctcgcctctctacctccgagataactcgcctcatctct |
14288483 |
T |
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