View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4284-Insertion-4 (Length: 186)

Name: NF4284-Insertion-4
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4284-Insertion-4
NF4284-Insertion-4
[»] chr4 (28 HSPs)
chr4 (39-186)||(27468375-27468522)
chr4 (39-186)||(27514836-27514983)
chr4 (39-186)||(27475627-27475774)
chr4 (39-186)||(27503867-27504014)
chr4 (46-179)||(27524476-27524609)
chr4 (51-165)||(27508818-27508932)
chr4 (39-164)||(27489927-27490052)
chr4 (46-186)||(27497377-27497517)
chr4 (46-165)||(27420374-27420493)
chr4 (50-129)||(27526171-27526250)
chr4 (46-145)||(27570104-27570203)
chr4 (39-89)||(27423264-27423314)
chr4 (71-145)||(27478963-27479037)
chr4 (71-145)||(27486023-27486097)
chr4 (50-145)||(27523462-27523557)
chr4 (46-145)||(27412656-27412749)
chr4 (45-89)||(27425854-27425898)
chr4 (46-89)||(27415663-27415706)
chr4 (59-126)||(27424582-27424649)
chr4 (52-87)||(27945687-27945722)
chr4 (59-105)||(27414372-27414418)
chr4 (39-89)||(27431196-27431246)
chr4 (59-129)||(27476689-27476759)
chr4 (51-129)||(27505762-27505840)
chr4 (71-145)||(27506684-27506758)
chr4 (48-145)||(17970285-17970382)
chr4 (12-39)||(27475667-27475694)
chr4 (12-39)||(27503947-27503974)
[»] chr5 (2 HSPs)
chr5 (46-145)||(1756812-1756911)
chr5 (46-177)||(1754642-1754773)
[»] chr3 (12 HSPs)
chr3 (48-134)||(55084783-55084869)
chr3 (39-87)||(38033827-38033875)
chr3 (46-145)||(50909946-50910045)
chr3 (39-145)||(38036841-38036947)
chr3 (46-87)||(50911924-50911965)
chr3 (39-87)||(38028814-38028862)
chr3 (39-87)||(38040129-38040177)
chr3 (48-84)||(50904849-50904885)
chr3 (46-145)||(38024930-38025029)
chr3 (46-145)||(38031382-38031481)
chr3 (49-86)||(48840769-48840806)
chr3 (46-145)||(38043889-38043988)
[»] chr8 (1 HSPs)
chr8 (46-87)||(21604809-21604850)
[»] chr2 (1 HSPs)
chr2 (48-145)||(3073555-3073652)
[»] chr7 (1 HSPs)
chr7 (112-144)||(21477494-21477526)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 27468375 - 27468522
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacata 138  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  27468375 cctcggattgactcaacaagtcttgaaatgaaggttggtttaagtatgatacagggactacaaaccgcaccagtttctctccaacatacaccgcaacata 27468474  T
Q  139 gccctttctcacttctacagattttgacgttgcttgtctagctgttac 186  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27468475 gccctttctcacttctacagattttgatgttgcttgtctagctgttac 27468522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 27514983 - 27514836
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacata 138  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  27514983 cctcggattgactcaacaagtcttgaaatgaaggttgattcaagtatgatacagggactacaaaccgcaccagtttctctccaacatacaccgcaacata 27514884  T
Q  139 gccctttctcacttctacagattttgacgttgcttgtctagctgttac 186  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27514883 gccctttctcacttctacagattttgatgttgcttgtctagctgttac 27514836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 27475627 - 27475774
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacata 138  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27475627 cctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggcaacata 27475726  T
Q  139 gccctttctcacttctacagattttgacgttgcttgtctagctgttac 186  Q
    ||||||| |||||||||| |||||||| |||| |||||||||||||||    
T  27475727 gccctttttcacttctactgattttgatgttgtttgtctagctgttac 27475774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 27504014 - 27503867
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacata 138  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  27504014 cctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccaatttctctccaacatacacggaaacata 27503915  T
Q  139 gccctttctcacttctacagattttgacgttgcttgtctagctgttac 186  Q
    ||||||| |||||||||| |||||||| |||| |||||||||||||||    
T  27503914 gccctttttcacttctactgattttgatgttgtttgtctagctgttac 27503867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 27524609 - 27524476
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||| ||||| |||||||||    
T  27524609 ttgattcaacaagtcttgaaatgaaggttggttcaaatatgatacaggaactatgaaccgcgtcagtttctctccaacatacactgcaacgtagcccttt 27524510  T
Q  146 ctcacttctacagattttgacgttgcttgtctag 179  Q
    ||||||||||||||||||||  ||||||| ||||    
T  27524509 ctcacttctacagattttgattttgcttgactag 27524476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 27508932 - 27508818
Alignment:
Q  51 tcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagccctttctcac 150  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||    
T  27508932 tcaacaagtcttgaaatgaaggttggttcaaatatgacacaggaacgacaaaacgcgtcagtttctctccaacatacactgcaacatagccctttctcac 27508833  T
Q  151 ttctacagattttga 165  Q
    ||||| |||||||||    
T  27508832 ttctatagattttga 27508818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 27490052 - 27489927
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacata 138  Q
    |||||| |||| ||||||| ||||||||||| |||| ||| |||||||| ||||| |||||||||||     |||||||||||||||||||  |||||||    
T  27490052 cctcggcttgattcaacaaatcttgaaatgatggtttgtttaagtatgacacagggactacaaaccgtttttgtttctctccaacatacactacaacata 27489953  T
Q  139 gccctttctcacttctacagattttg 164  Q
    ||||||||| |||||| | |||||||    
T  27489952 gccctttcttacttctgctgattttg 27489927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 27497377 - 27497517
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||||||| | ||||||  | |||||||| |||||||| | ||| |  |||||||||    |||| |||||||||||||| |||||||||||||||    
T  27497377 ttgactcaacaaatattgaaacaatggttggtttaagtatgagatagggatcacaaaccgcttttgtttatctccaacatacactgcaacatagcccttt 27497476  T
Q  146 ctcacttctacagattttgacgttgcttgtctagctgttac 186  Q
       ||||||||||||||||| | |||||||||||| |||||    
T  27497477 ggaacttctacagattttgatgatgcttgtctagcagttac 27497517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 27420493 - 27420374
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||| |||| ||||||||||||||||| ||||||||||||| || | || | |||||| | |||||||||||||||| || |||| ||| ||||||    
T  27420493 ttgactcagcaagccttgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatcccttt 27420394  T
Q  146 ctcacttctacagattttga 165  Q
      ||| || |||||||||||    
T  27420393 ggcacgtccacagattttga 27420374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 27526171 - 27526250
Alignment:
Q  50 ctcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacac 129  Q
    |||||||| ||||| ||||| | |||||||||||||||||||||||  |||||||||  || ||||||||||||||||||    
T  27526171 ctcaacaattcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctccaacatacac 27526250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 27570104 - 27570203
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||| |||||||||||||||||||||| | ||||||||||| || |  ||| |||||| | |||||||||||||||| || |||| ||| ||||||    
T  27570104 ttgactcagcaagtcttgaaatgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatcccttt 27570203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 27423314 - 27423264
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatgata 89  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  27423314 cctcggcttgactcaacaattcttgaaatgaaggttggttcaagtatgata 27423264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 27478963 - 27479037
Alignment:
Q  71 ggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||||||||||||||  || || |||||||||  | ||||||||||||||||||| |||||||||||||||    
T  27478963 ggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagcccttt 27479037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 27486023 - 27486097
Alignment:
Q  71 ggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||||||||||||||  || || |||||||||  | ||||||||||||||||||| |||||||||||||||    
T  27486023 ggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagcccttt 27486097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 27523462 - 27523557
Alignment:
Q  50 ctcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||| ||||| ||||||| ||||||||| |||||||||||||  |||||||||  || ||||||||| || ||||| || | ||||||||||    
T  27523462 ctcaacaattcttggaatgaagtttggttcaaatatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatagcccttt 27523557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 27412749 - 27412656
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    ||||||||| |||||||||||| | |||||||||||||||||||  || |  |||||||      |||||||||||||||||||||||| ||| ||||||    
T  27412749 ttgactcaataagtcttgaaataatggttggttcaagtatgatattgggatcacaaacc------gtttctctccaacatacacggcaatatatcccttt 27412656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 27425898 - 27425854
Alignment:
Q  45 attgactcaacaagtcttgaaatgaaggttggttcaagtatgata 89  Q
    |||||||||| |||||||||||||| |||||||||||||||||||    
T  27425898 attgactcaataagtcttgaaatgatggttggttcaagtatgata 27425854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 27415706 - 27415663
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 89  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  27415706 ttgactcaacaagtcttgaaacgatggttggttcaagtatgata 27415663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 27424582 - 27424649
Alignment:
Q  59 tcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacata 126  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||  || ||  |||||||||||    
T  27424582 tcttgaaatgaaggttggttcaagtatgatactggaatcacaaaccgcctcatttgatctccaacata 27424649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 27945722 - 27945687
Alignment:
Q  52 caacaagtcttgaaatgaaggttggttcaagtatga 87  Q
    ||||||||||||||||||||||||||||||||||||    
T  27945722 caacaagtcttgaaatgaaggttggttcaagtatga 27945687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 27414372 - 27414418
Alignment:
Q  59 tcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccg 105  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||    
T  27414372 tcttgaaatgagggttggttcaagtatgatacaggaatcacaaaccg 27414418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 27431196 - 27431246
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatgata 89  Q
    |||||| |||| ||||||| ||||||||||| |||||||||||||||||||    
T  27431196 cctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata 27431246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 27476759 - 27476689
Alignment:
Q  59 tcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacac 129  Q
    ||||| ||||| | |||||||||||||||||||||||  |||||||||  || |||||| |||||||||||    
T  27476759 tcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctcaccaacatacac 27476689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 27505762 - 27505840
Alignment:
Q  51 tcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacac 129  Q
    ||||||| ||||| ||||| | |||||||||||||||||||||||  |||||||||  || ||||||||| || |||||    
T  27505762 tcaacaattcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctcctacgtacac 27505840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 27506758 - 27506684
Alignment:
Q  71 ggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||| ||||||||||  || |  |||||||||| | |||||||||| ||||| || |||||||||||||||    
T  27506758 ggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagcccttt 27506684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 17970382 - 17970285
Alignment:
Q  48 gactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||| ||||| ||||||||||| |||||||||||||||   ||| |  |||||||||  || || ||||||||| ||||| |||| ||| ||||||    
T  17970382 gactcagcaagtattgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatcccttt 17970285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 12 - 39
Target Start/End: Original strand, 27475667 - 27475694
Alignment:
Q  12 caagtatgatacaggaactacaaaccgc 39  Q
    ||||||||||||||||||||||||||||    
T  27475667 caagtatgatacaggaactacaaaccgc 27475694  T

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Target: chr4; HSP #28
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 12 - 39
Target Start/End: Complemental strand, 27503974 - 27503947
Alignment:
Q  12 caagtatgatacaggaactacaaaccgc 39  Q
    ||||||||||||||||||||||||||||    
T  27503974 caagtatgatacaggaactacaaaccgc 27503947  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 1756812 - 1756911
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||||||||| |||||| || |||||||||||||||||||  || |  |||||||||  | ||||||||||||||| ||| |||| ||||||||||    
T  1756812 ttgactcaacaagtattgaaacgatggttggttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagcccttt 1756911  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 1754773 - 1754642
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||||||||  |||||| || ||||| |||||||||||||  || |  |||  |||   | |||||||||||| |||||| |||||||||||||||    
T  1754773 ttgactcaacaaggattgaaacgatggttgattcaagtatgatattgggatcacatgccgtttctgtttctctccaatatacactgcaacatagcccttt 1754674  T
Q  146 ctcacttctacagattttgacgttgcttgtct 177  Q
       ||||||||  |||| || |||||||||||    
T  1754673 ggaacttctactaatttcgatgttgcttgtct 1754642  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 55084869 - 55084783
Alignment:
Q  48 gactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaa 134  Q
    |||||||||||||||||||||| |||||||||||||| || | ||| |  |||||||||  || |||||||||||||||||| ||||    
T  55084869 gactcaacaagtcttgaaatgatggttggttcaagtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaa 55084783  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 38033827 - 38033875
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatga 87  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||||||    
T  38033827 cctcggcttgactcaacaagttttgaaatgaagcttggttcaagtatga 38033875  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 50910045 - 50909946
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||| ||||||||| ||||||||||| ||||||||||||||| |  || |  |||||||||  || || ||||||||||||||| |||| ||| ||||||    
T  50910045 ttgattcaacaagttttgaaatgaagcttggttcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataacccttt 50909946  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 38036841 - 38036947
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacata 138  Q
    |||||| |||||||||||| | ||||||||||| ||||||||||||||  |  || || ||||||||   || || ||||||||| ||||| |||| |||    
T  38036841 cctcggcttgactcaacaaattttgaaatgaagcttggttcaagtatggcatggggacaacaaaccgtttcatttgctctccaacgtacactgcaagata 38036940  T
Q  139 gcccttt 145  Q
    |||||||    
T  38036941 gcccttt 38036947  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 50911924 - 50911965
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatga 87  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  50911924 ttgactcaacaagttttgaaatgaagcttggttcaagtatga 50911965  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 38028814 - 38028862
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatga 87  Q
    |||||| ||||||||||| || ||||||||||| |||||||||||||||    
T  38028814 cctcggcttgactcaacaggttttgaaatgaagcttggttcaagtatga 38028862  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 38040129 - 38040177
Alignment:
Q  39 cctcggattgactcaacaagtcttgaaatgaaggttggttcaagtatga 87  Q
    |||||| ||||||||||| || ||||||||||| |||||||||||||||    
T  38040129 cctcggcttgactcaacaggttttgaaatgaagcttggttcaagtatga 38040177  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 50904849 - 50904885
Alignment:
Q  48 gactcaacaagtcttgaaatgaaggttggttcaagta 84  Q
    |||||||||||||||||||||||| ||||||||||||    
T  50904849 gactcaacaagtcttgaaatgaagtttggttcaagta 50904885  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 38024930 - 38025029
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    ||||||||| |||| |||||| |||| ||||||||||||||| |  || |  |||||||||  || || |||||||||||| || |||| ||||||||||    
T  38024930 ttgactcaataagttttgaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagcccttt 38025029  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 38031382 - 38031481
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    ||||||||| |||| |||||| |||| ||||||||||||||| |  || |  |||||||||  || || |||||||||||| || |||| ||||||||||    
T  38031382 ttgactcaataagttttgaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagcccttt 38031481  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 48840769 - 48840806
Alignment:
Q  49 actcaacaagtcttgaaatgaaggttggttcaagtatg 86  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  48840769 actcaacaagtcttgaaatgaggcttggttcaagtatg 48840806  T

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Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 38043988 - 38043889
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||||| |||||||||||| |||| ||| ||||||||||| | ||| |  |||||||||  || || ||||||||  ||||| |||| ||||| ||||    
T  38043988 ttgactcagcaagtcttgaaacgaagtttgattcaagtatgacatagggatcacaaaccgcttcatttcctctccaaagtacactgcaagatagctcttt 38043889  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 21604809 - 21604850
Alignment:
Q  46 ttgactcaacaagtcttgaaatgaaggttggttcaagtatga 87  Q
    ||||||||||| || ||||||||||| |||||||||||||||    
T  21604809 ttgactcaacatgttttgaaatgaagcttggttcaagtatga 21604850  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 3073652 - 3073555
Alignment:
Q  48 gactcaacaagtcttgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccagtttctctccaacatacacggcaacatagcccttt 145  Q
    |||||| ||||| ||||||||||| |||||||||||||||   ||| |  |||||||||  || || ||||||||| ||||| |||| ||| ||||||    
T  3073652 gactcagcaagtattgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatcccttt 3073555  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 21477494 - 21477526
Alignment:
Q  112 tttctctccaacatacacggcaacatagccctt 144  Q
    |||||||||||||||||| ||||||||||||||    
T  21477494 tttctctccaacatacactgcaacatagccctt 21477526  T

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