View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4284-Insertion-6 (Length: 199)
Name: NF4284-Insertion-6
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284-Insertion-6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 4879872 - 4879685
Alignment:
| Q |
12 |
ctcacatagtaatagatgaaggtagacttgagtcctatgcacctcctcacatagttgagtatgttttgtgcaatgtgcaatcaacttccatgattgagct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4879872 |
ctcacatagtaatagatgaaggtagacttgagtcttatgcacctcctcacatagttgagtatgttttgtgcaatgtgcaatcaacttccatgattcagct |
4879773 |
T |
|
| Q |
112 |
ccaaattcatcccaaggatattgtttttcgagatattcagcttcaaggctgaaattagctaatggagtgtaaattatgaaaagttcag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4879772 |
ccaaattcatcccaaggatattgtttttcgagatattcagcttcaaggctgaaattagctaatggagtgtaaattatgaaaagttcag |
4879685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University