View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4284_low_11 (Length: 296)
Name: NF4284_low_11
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 30016586 - 30016702
Alignment:
| Q |
11 |
cacagacataattaaaaaatgcaaatagttaattatcctccttcatctcctcaacagtaacgtaccctatgacatgcaccatataaattataatacatat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30016586 |
cacacacataattaaaaaatgcaaatagttaattatcctccttcatctcctcaacagtaacgtaccctatgacatgcaccatataaattataatacatat |
30016685 |
T |
|
| Q |
111 |
tattttattctaatagga |
128 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
30016686 |
ta-tttattctaatagga |
30016702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 30016767 - 30016852
Alignment:
| Q |
193 |
aggttggattaatccctttttgtttatatcttccttcttacattcttgtgcttcttacatgcatataatatggttttgtaagcact |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30016767 |
aggttggattaatccctttttgtttatatcttccttcttacattcttgtgcttcttacatgcatataatatggttttgtaagcact |
30016852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University