View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284_low_14 (Length: 246)
Name: NF4284_low_14
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 26453222 - 26453464
Alignment:
| Q |
4 |
ttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaannnnnnnctccaatgctagaactca------------ |
91 |
Q |
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| T |
26453222 |
ttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaatttttttctccaatgctagaactcaacacacttccta |
26453321 |
T |
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| Q |
92 |
ttttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctgtactttttctaatgcagt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26453322 |
ttttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctctctgcttttcttaccttttctgtactttttctaatgcagt |
26453421 |
T |
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| Q |
192 |
cagtgctagaacatgttctagtgggagaatttttctccacagg |
234 |
Q |
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| T |
26453422 |
cagtgctagaacatgttctagtgggagaattgttctccacagg |
26453464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 47680588 - 47680531
Alignment:
| Q |
4 |
ttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaacca |
61 |
Q |
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| T |
47680588 |
ttttgttcttagctgctaaatattgggtccaagtatgccatgtaggatttaacaacca |
47680531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 47680488 - 47680406
Alignment:
| Q |
91 |
attttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctg |
173 |
Q |
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||||||||||||||||| |||| | |||||||||| || |||| ||||||||||||||| | ||| |||||| ||||||| |
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| T |
47680488 |
attttactttatgtaggaccctcgtgtttcttctcttatcatccattatacctcttctctctccccttctcttactttttctg |
47680406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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