View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284_low_18 (Length: 236)
Name: NF4284_low_18
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 22196504 - 22196298
Alignment:
| Q |
13 |
gaacctgtgttgtttgataaatatctcagtatcatttagatattaaaaggttaaattgtaaaataatgcttaagaaaaattaataaattttaagatcgga |
112 |
Q |
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| T |
22196504 |
gaacctatattgtttgataaatatctcagtatcattttgatattaaaaggttaaattgtaaaataatccgtaagacaaattgataaattttaagatcgga |
22196405 |
T |
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| Q |
113 |
tggagattgtat-ttttaaggaatgcaatacaattatgaatttaattattaaattaaattgatagaggtaaatgaattataagaaatgtcctataataac |
211 |
Q |
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| T |
22196404 |
tggagattgtatgatttaaggaatgcaatacaattatgaa-ttgattatcaaattaaattgatagaggtaaatgaattataagaaatgtcatataataac |
22196306 |
T |
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| Q |
212 |
ctgatttg |
219 |
Q |
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|||||||| |
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| T |
22196305 |
ctgatttg |
22196298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 22193758 - 22193551
Alignment:
| Q |
12 |
agaacctgtgttgtttgataaatatctcagtatcatttagatattaaaaggttaaattgtaaaataatgcttaagaaaaattaataaattttaagatcgg |
111 |
Q |
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||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
22193758 |
agaacctatattgtttgataaatatcttagtatcattttgatattaaaaggttaaattgtaaaataatccgtaagacaaattaataaattttaagatcgg |
22193659 |
T |
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| Q |
112 |
atggagattgtat-ttttaaggaatgcaatacaattatgaatttaattattaaattaaattgatagaggtaaatgaattataagaaatgtcctataataa |
210 |
Q |
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||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||| | |||||||||||||||||||||| ||||||||| |
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| T |
22193658 |
atggagattgtatgatttaaggaatgcaatacaattatgaa-ttgattatcaaattaaattgatacaagtaaatgaattataagaaatgttctataataa |
22193560 |
T |
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| Q |
211 |
cctgatttg |
219 |
Q |
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| T |
22193559 |
catgatttg |
22193551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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