View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284_low_22 (Length: 218)
Name: NF4284_low_22
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 17529908 - 17529791
Alignment:
| Q |
21 |
gcaatggtggcaacaataatgtcccagaagccaagtgcaatagaaacatcacatgtggcaacaacaatgatgggaaggaataaaatcaggaatatcaatc |
120 |
Q |
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| T |
17529908 |
gcaatggtagcaacaataatgtcacagaagccaagtgcaacagaaacatcacatttggaaacaacaatgatgggaaggaataaaatcaggaataccaatt |
17529809 |
T |
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| Q |
121 |
acaagaccaaaactacaa |
138 |
Q |
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| T |
17529808 |
acaagacctaaactacaa |
17529791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 16856485 - 16856392
Alignment:
| Q |
22 |
caatggtggcaacaataatgtcccagaagccaagtgcaatagaaacatcacatgtggcaacaacaatgatgggaaggaataaaatcaggaatat |
115 |
Q |
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| T |
16856485 |
caatggtagcaacaataatgtcgcagaagacaatagaaatggaaacatcacaggtagcagcaacaatgatgggaagaaataaaaccaggaatat |
16856392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 17514697 - 17514645
Alignment:
| Q |
82 |
caacaatgatgggaaggaataaaatcaggaatatcaatcacaagaccaaaact |
134 |
Q |
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| T |
17514697 |
caacaatgatgggaaggaataaaatcaggaatatcaattacaagacctaaact |
17514645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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