View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284_low_5 (Length: 579)
Name: NF4284_low_5
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284_low_5 |
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| [»] scaffold0008 (4 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 69612 - 69312
Alignment:
| Q |
20 |
cccccttcttcatatgccctcttaatctttaagtttcttaatttcatttgttgtcttatgctgattttccttgccatgaataaagtttgtattcttatac |
119 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69612 |
cccccttctccatatgccctcttaatctttaagtttcttaatttcatttgttgtcctatgctgattttccttgccatgaataaagtttgtattcttatac |
69513 |
T |
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| Q |
120 |
tcatcaataagagaaacctttttgctcctttgttttcatatgatctcacatattttaggttttcatctagttgtctcttgagattcttgaaccttaaaat |
219 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69512 |
tcatcaataagagaaacctctttgctcctttgtttccatatgatctcacatattttaggttttcatctagttgtctcttgagattcttgaaccttaaaat |
69413 |
T |
|
| Q |
220 |
atcttcggttgagtttgaccacatagaagtatctatacgaaacttctcaatgttttggttctctttcctcacatttctcatcttatatttgtcgaaagaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69412 |
atcttcggttgagtttgaccacatagaagtatctatacgaaacttctcaatgtgttggttctctttcctcacatttctcatcttatatttgtcgaaagaa |
69313 |
T |
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| Q |
320 |
t |
320 |
Q |
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| |
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| T |
69312 |
t |
69312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 77455 - 77155
Alignment:
| Q |
20 |
cccccttcttcatatgccctcttaatctttaagtttcttaatttcatttgttgtcttatgctgattttccttgccatgaataaagtttgtattcttatac |
119 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77455 |
cccccttctccatatgccctcttaatctttaagtttcttaatttcatttgttgtcctatgctgattttccttgccatgaataaagtttgtattcttatac |
77356 |
T |
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| Q |
120 |
tcatcaataagagaaacctttttgctcctttgttttcatatgatctcacatattttaggttttcatctagttgtctcttgagattcttgaaccttaaaat |
219 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77355 |
tcatcaataagagaaacctctttgctcctttgtttccatatgatctcacatattttaggttttcatctagttgtctcttgagattcttgaaccttaaaat |
77256 |
T |
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| Q |
220 |
atcttcggttgagtttgaccacatagaagtatctatacgaaacttctcaatgttttggttctctttcctcacatttctcatcttatatttgtcgaaagaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77255 |
atcttcggttgagtttgaccacatagaagtatctatacgaaacttctcaatgtgttggttctctttcctcacatttctcatcttatatttgtcgaaagaa |
77156 |
T |
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| Q |
320 |
t |
320 |
Q |
| |
|
| |
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| T |
77155 |
t |
77155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 327 - 515
Target Start/End: Complemental strand, 69258 - 69070
Alignment:
| Q |
327 |
cccaccccatcgacacactcctgataatttcttcataattttcatcctttctcgaagcctcttcaaatataaatatatgttttcttttcttcctccctct |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69258 |
cccaccccatcgacacactcctgataatttcttcataattttcatcctttctcgaagcctcttcaaatataaatatatgttttcttttcttcctccctct |
69159 |
T |
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| Q |
427 |
cataaaattagcttctaattcaaataaaataacaacatgatcagaactatacctgggtaagtggagacctttgattggttataatatgt |
515 |
Q |
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| T |
69158 |
cataaaattagcttctaattcaaataaaataacaacatgatcagaactatacctgggtaagtggaaacctttgattggttataatatgt |
69070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 327 - 515
Target Start/End: Complemental strand, 77101 - 76913
Alignment:
| Q |
327 |
cccaccccatcgacacactcctgataatttcttcataattttcatcctttctcgaagcctcttcaaatataaatatatgttttcttttcttcctccctct |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77101 |
cccaccccatcgacacactcctgataatttcttcataattttcatcctttctcgaagcctcttcaaatataaatatatgttttcttttcttcctccctct |
77002 |
T |
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| Q |
427 |
cataaaattagcttctaattcaaataaaataacaacatgatcagaactatacctgggtaagtggagacctttgattggttataatatgt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
77001 |
cataaaattagcttctaattcaaataaaataacaacatgatcagaactatacctgggtaagtggaaacctttgattggttataatatgt |
76913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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