View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4284_low_6 (Length: 485)
Name: NF4284_low_6
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284_low_6 |
 | |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 115554 - 116014
Alignment:
| Q |
18 |
atagggagataggaatatctactctaatcagtgaaatgacgtgctttctcccatttctttgcctcaaactttctttctgaagattccttgtgatgcgggt |
117 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115554 |
atagggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctgaagattccttgtgatgcgggt |
115653 |
T |
|
| Q |
118 |
aacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaacacataaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
115654 |
aacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaacacataaat |
115753 |
T |
|
| Q |
218 |
tggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115754 |
tggaagctgattctcaagaagcaacaaatcccgctggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattt |
115853 |
T |
|
| Q |
318 |
tctcttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115854 |
tctcttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggc |
115953 |
T |
|
| Q |
418 |
gtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtc |
478 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
115954 |
gtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtc |
116014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 21 - 376
Target Start/End: Complemental strand, 606920 - 606565
Alignment:
| Q |
21 |
gggagataggaatatctactctaatcagtgaaatgacgtgctttctcccatttctttgcctcaaactttctttctgaagattccttgtgatgcgggtaac |
120 |
Q |
| |
|
|||||||| ||||||||| || |||| |||||||| ||| ||||||||| || ||| |||||||| |||||||||| || ||||||||||| ||||||| |
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|
| T |
606920 |
gggagatatgaatatctaatcaaatcggtgaaatggagtgatttctcccaatttttttcctcaaacattctttctgatgactccttgtgatgagggtaac |
606821 |
T |
|
| Q |
121 |
aagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaacacataaattgg |
220 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||| |||||| |||||||| |||||||||||| |||||||||| |||||| |||||||| ||||| |
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|
| T |
606820 |
aagatgcaaaatactcatgtgctagcttgataaaccgattgtggtttttgacactgcttggaacaaccgtgtcatataatttttctaacacatagattgg |
606721 |
T |
|
| Q |
221 |
aagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttct |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||||||| |||||| |||| || ||| |
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| T |
606720 |
aagctgattctcaagaagcaacaaatcccgttggatacttttgcttacacaatgttgagttactatgtaatcatctttgtgttcccatctttttttctct |
606621 |
T |
|
| Q |
321 |
cttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattg |
376 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |
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|
| T |
606620 |
ctaagaaacaactccatgatgaacacagcatccaatagtatcatatcaacaaattg |
606565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 43 - 472
Target Start/End: Complemental strand, 178211 - 177779
Alignment:
| Q |
43 |
aatcagtgaaatgacgtgctttctcccatttctttgcctcaaactttctttctgaagat---tccttgtgatgcgggtaacaagatgcaaaatactcatg |
139 |
Q |
| |
|
||||| |||||||| ||| ||||||||| ||||||| | ||||| | |||||||||||| || | ||||| || ||||||||| ||||||| ||||| |
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|
| T |
178211 |
aatcaatgaaatgaagtgatttctcccacttctttgacccaaacatactttctgaagatgattcatgttgatgaggataacaagatacaaaatattcatg |
178112 |
T |
|
| Q |
140 |
tgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaacacataaattggaagctgattctcaagaagc |
239 |
Q |
| |
|
|||||| || |||||||| |||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
178111 |
tgcaagatttagaaaccatttgtgctttttgtcactgcttggaacaactgtgtcatatagtttttccaacacataaattggaatctgattctcaagaagc |
178012 |
T |
|
| Q |
240 |
aacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttctcttagaaacaactccatga |
339 |
Q |
| |
|
||||| || | || ||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||||| ||||| |||||||| |
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|
| T |
178011 |
aacaagtcatgctgaatatttttacttaaacaaagttgagttactatataatcatctttgtgttcccattttttagcttctcttaaaaacagctccatga |
177912 |
T |
|
| Q |
340 |
tgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttg |
439 |
Q |
| |
|
|||||||| |||||| | |||||||||||| ||||| ||| | ||||||| | || |||||||||||||| |||| || |||| ||||||||||| |
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|
| T |
177911 |
tgaacacaacatccaacaatatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttc |
177812 |
T |
|
| Q |
440 |
aaggaaaactttgtagttcatgaaatcactttt |
472 |
Q |
| |
|
|||||| |||||||||| || |||||| |||| |
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| T |
177811 |
taggaaagctttgtagttaattaaatcattttt |
177779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 21 - 472
Target Start/End: Original strand, 9949 - 10400
Alignment:
| Q |
21 |
gggagataggaatatctactctaatcagtgaaatgacgtgctttctcccatttctttgcctcaaactttctttctgaagattccttgtgatgcgggtaac |
120 |
Q |
| |
|
|||||||| ||| | ||| || ||||||| |||||| || ||||||||| || ||| |||||||| |||||| ||| || || | |||||| ||||| | |
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|
| T |
9949 |
gggagataagaagacctaatcaaatcagtaaaatgaaatgatttctcccaatttttttcctcaaacattctttttgatgactcttggtgatgagggtagc |
10048 |
T |
|
| Q |
121 |
aagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaacacataaattgg |
220 |
Q |
| |
|
|||| |||||||| |||||||| ||| || |||| |||||| |||||||| ||| ||||||||| |||| |||| ||||| ||||| ||||| ||||| |
|
|
| T |
10049 |
aagaagcaaaatagtcatgtgctagcatggtaaacagattgtggtttttgacattgtttggaacaactgtgccatagagtttctccaagacatacattgg |
10148 |
T |
|
| Q |
221 |
aagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttct |
320 |
Q |
| |
|
||| |||||||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |
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|
| T |
10149 |
aagttgattctcaataagcaacaaatccctttgaatacttctactcacacaaagttgagttataatataatcatctttgtgttcccattttttgttttct |
10248 |
T |
|
| Q |
321 |
cttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgta |
420 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||| |||||||| ||||||| ||| ||| || ||||||| ||| |||||||||||||||||||||| |
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| T |
10249 |
cttaaaaataactccatgatgaagacagaatccaacagtatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgta |
10348 |
T |
|
| Q |
421 |
ttttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
472 |
Q |
| |
|
| || || |||||||||||||| || ||||||||||||| |||||| |||| |
|
|
| T |
10349 |
tattctgatcttcttgttgaagaaattctttgtagttcatcaaatcattttt |
10400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 21 - 472
Target Start/End: Original strand, 23403 - 23854
Alignment:
| Q |
21 |
gggagataggaatatctactctaatcagtgaaatgacgtgctttctcccatttctttgcctcaaactttctttctgaagattccttgtgatgcgggtaac |
120 |
Q |
| |
|
|||||||| ||| | ||| || ||||||| |||||| || ||||||||| || ||| |||||||| |||||| ||| || || | |||||| ||||| | |
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|
| T |
23403 |
gggagataagaagacctaatcaaatcagtaaaatgaaatgatttctcccaatttttttcctcaaacattctttttgatgactcttggtgatgagggtagc |
23502 |
T |
|
| Q |
121 |
aagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaacacataaattgg |
220 |
Q |
| |
|
|||| |||||||| |||||||| ||| || |||| |||||| |||||||| ||| ||||||||| |||| |||| ||||| ||||| ||||| ||||| |
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|
| T |
23503 |
aagaagcaaaatagtcatgtgctagcatggtaaacagattgtggtttttgacattgtttggaacaactgtgccatagagtttctccaagacatacattgg |
23602 |
T |
|
| Q |
221 |
aagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttct |
320 |
Q |
| |
|
||| |||||||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |
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|
| T |
23603 |
aagttgattctcaataagcaacaaatccctttgaatacttctactcacacaaagttgagttataatataatcatctttgtgttcccattttttgttttct |
23702 |
T |
|
| Q |
321 |
cttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgta |
420 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||| |||||||| ||||||| ||| ||| || ||||||| ||| |||||||||||||||||||||| |
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| T |
23703 |
cttaaaaataactccatgatgaagacagaatccaacagtatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgta |
23802 |
T |
|
| Q |
421 |
ttttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
472 |
Q |
| |
|
| || || |||||||||||||| || ||||||||||||| |||||| |||| |
|
|
| T |
23803 |
tattctgatcttcttgttgaagaaattctttgtagttcatcaaatcattttt |
23854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 34 - 472
Target Start/End: Original strand, 37438196 - 37438640
Alignment:
| Q |
34 |
atctactctaatcagtgaaatgacgtgctttctcccatttctttgcctcaaactttctttctgaagattccttgtgatgcgggtaacaagatgcaaaata |
133 |
Q |
| |
|
||||| || ||||| |||||||| || ||| ||||| || |||| |||||||||||||||||||||||| |||||| ||||||||||||| ||| || |
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|
| T |
37438196 |
atctaatcaaatcaatgaaatgaagttatttgtcccaattttttgactcaaactttctttctgaagattctttgtgacaagggtaacaagatgaaaagta |
37438295 |
T |
|
| Q |
134 |
ctcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaacacataaattggaagctgattctca |
233 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||||| || |||| |||| | |||||||||||||| |||||| | |||||||||| ||||| | |
|
|
| T |
37438296 |
tgcatgtgatagcttgataaaccaattgtcctttttgacactggttgggacaactatgtcatatagttttaccaacaaaaaaattggaagttgattttag |
37438395 |
T |
|
| Q |
234 |
agaagcaacaaatcccgttggatacttttacttacacaaag-ttgagttattatataatcatctttgtgctcccattttttattttctctt-agaaacaa |
331 |
Q |
| |
|
|||| |||||| || |||||| | |||||||||| ||| | ||| | || || |||||||||||| || ||| |||| ||| ||||||| | |||||| |
|
|
| T |
37438396 |
agaaacaacaagtcatgttggacaattttacttactcaatgtttgggatactaaataatcatctttttgttcctatttattagcttctcttaaaaaacaa |
37438495 |
T |
|
| Q |
332 |
ctccatgatgaacacagaatccaatagtatc----atgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttg |
427 |
Q |
| |
|
| ||||||||||||| |||||| |||||| || | | ||||| | | || |||||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
37438496 |
catcatgatgaacacaacatccaacagtatcatatatatacataaattgtttattgctgatatttgagaatttcttttggtaacatcggcgtatattttg |
37438595 |
T |
|
| Q |
428 |
ctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
472 |
Q |
| |
|
||||||||||| || ||| |||| ||||||| ||||||||||| |
|
|
| T |
37438596 |
ctcttcttgttcaacgaaggttttgcagttcattaaatcactttt |
37438640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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