View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284_low_7 (Length: 474)
Name: NF4284_low_7
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Complemental strand, 52712813 - 52712369
Alignment:
| Q |
13 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712813 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
52712714 |
T |
|
| Q |
113 |
aacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattc |
212 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52712713 |
aacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattc |
52712614 |
T |
|
| Q |
213 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712613 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa |
52712514 |
T |
|
| Q |
313 |
agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacctaaggcaatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712513 |
agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacctaaggcaatg |
52712414 |
T |
|
| Q |
413 |
agaccaagtgcaccgtacaagaatgagatttgagcttgacttgct |
457 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52712413 |
agaccaagtgcaccgtacaagaatgagatttgagcttgacttgct |
52712369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 52721634 - 52721191
Alignment:
| Q |
13 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
112 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
52721634 |
aatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctgaaga |
52721535 |
T |
|
| Q |
113 |
aacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattc |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||| |||| |
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|
| T |
52721534 |
aacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattc |
52721435 |
T |
|
| Q |
213 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
52721434 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaattaaagaa |
52721335 |
T |
|
| Q |
313 |
agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacctaaggcaatg |
412 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| |
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|
| T |
52721334 |
agcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcctgtacccaaagcaata |
52721235 |
T |
|
| Q |
413 |
agaccaagtgcaccgtacaagaatgagatttgagcttgacttgc |
456 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
52721234 |
aggccaagtgcaccgtacaagaaggagatttggccttgacttgc |
52721191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 457
Target Start/End: Complemental strand, 52698994 - 52698550
Alignment:
| Q |
13 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
112 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||| || ||||||||||| |||||||||| | |||||||||| | || |||||||||||||||||| |
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|
| T |
52698994 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
52698895 |
T |
|
| Q |
113 |
aacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattc |
212 |
Q |
| |
|
|||||||| || ||||||||||||| ||||| ||||| |||||| ||| ||| | || | | ||| ||||||| || ||||||||||||||| | | |
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|
| T |
52698894 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
52698795 |
T |
|
| Q |
213 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa |
312 |
Q |
| |
|
|||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| |||||||||||||| |||||| |||||||||||||||| |
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|
| T |
52698794 |
caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa |
52698695 |
T |
|
| Q |
313 |
agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacctaaggcaatg |
412 |
Q |
| |
|
|| | ||||| |||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||||||||||| ||||| ||||||||| |
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|
| T |
52698694 |
agagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacccaaggcaatg |
52698595 |
T |
|
| Q |
413 |
agaccaagtgcaccgtacaagaatgagatttgagcttgacttgct |
457 |
Q |
| |
|
|| |||||||||| ||||||||| || |||| |||| |||||| |
|
|
| T |
52698594 |
aggccaagtgcactatacaagaataagttttggccttggcttgct |
52698550 |
T |
|
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