View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284_low_8 (Length: 434)
Name: NF4284_low_8
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 146 - 426
Target Start/End: Original strand, 31241222 - 31241502
Alignment:
| Q |
146 |
ttgatgattaattgaaaataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcctccaactcatgccattttgtgtatgcttctcc |
245 |
Q |
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| T |
31241222 |
ttgatgattaattgaaaataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcctccaactcatgccattttgtgtatgcttctcc |
31241321 |
T |
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| Q |
246 |
caccaatttgtctatatagctctgccaattttgaaatggtatggcaccaattaaaatgaattagaggaccaacatctagcatatatataataatctacaa |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31241322 |
caccaatttgtctatatagctctgccaattttgaaatggtatggcaccaattaaaatgaattagaggaccaacatctagcatatatataataatctacat |
31241421 |
T |
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| Q |
346 |
agtaatactacaaatgtgaatcttaagtagtagatggttaatatattgtaccttattcatttggctcaagtactctctgct |
426 |
Q |
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| T |
31241422 |
agtaatactacaaatgtgaatctttagtagtagatggttaatatattgtaccttattcatttggctcaagtactctctgct |
31241502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 128 - 426
Target Start/End: Original strand, 31232234 - 31232532
Alignment:
| Q |
128 |
tattgagaacaaaagtcattgatgattaattgaaaataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcctccaactcatgcca |
227 |
Q |
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| T |
31232234 |
tattgagaacagaagtcattgatggttaattgaaaataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcctccaactcatgcca |
31232333 |
T |
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| Q |
228 |
ttttgtgtatgcttctcccaccaatttgtctatatagctctgccaattttgaaatggtatggcaccaattaaaatgaattagaggaccaacatctagcat |
327 |
Q |
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| T |
31232334 |
ttttgtgtatgcttctccaaccaatttgtctatatagctct-acaaattagaaatggtataacaccaattaaaatgaattagaagactaatatctagcat |
31232432 |
T |
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| Q |
328 |
ata-tataataatcta--caaagtaatactacaaatgtgaatcttaagtagtagatggttaatatattgtaccttattcatttggctcaagtactctctg |
424 |
Q |
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| T |
31232433 |
atagtgtaatcaacaaattaaagtaatactacaaatgtgagtcttgagtagtagatggtta--atattgtaccttattcatttggttcaagtactctctg |
31232530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 31208868 - 31208936
Alignment:
| Q |
146 |
ttgatgattaattgaaaataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcctccaa |
218 |
Q |
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| T |
31208868 |
ttgatgattaattgaaaataccttatgg----aaagcaatgttatcatttaaaatcccatcaacttcgtccaa |
31208936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31232114 - 31232185
Alignment:
| Q |
1 |
ttgttatccagtacaacatatcttgtgtggtgctacgaagccaatcaacatgagtatatgaacttatttctat |
73 |
Q |
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| T |
31232114 |
ttgttatccactacaacaggtcttgtatggtgctacgtagc-aaccagtatgagtatatgatcttatttctat |
31232185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 44030054 - 44029976
Alignment:
| Q |
150 |
tgattaattgaaaataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcctccaactcatgccat |
228 |
Q |
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| T |
44030054 |
tgattatttgaacataccttgagttaacaaagcaacgttgtcattcaaaacttcatcaatttcctccaactcattccat |
44029976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 44016525 - 44016603
Alignment:
| Q |
150 |
tgattaattgaaaataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcctccaactcatgccat |
228 |
Q |
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| T |
44016525 |
tgattattagaatataccttgagttaacaaagcaacgttgtcattcaaaacttcatcaatttcctccaactcattccat |
44016603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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