View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4284_low_9 (Length: 356)
Name: NF4284_low_9
Description: NF4284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4284_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 27733192 - 27732861
Alignment:
| Q |
18 |
ggtagttcaagcgaaggtctttatccgaactttgatagccaaagttccatgccaacagaaatttctggtgaatcatcatttgagacaaaacagtatggaa |
117 |
Q |
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| T |
27733192 |
ggtagttcaagtgaaggtctttatccgaactttgatagccaaagttctatgccaacagaaatttctggtgaatcatcatttgagacaacacagtatggaa |
27733093 |
T |
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| Q |
118 |
attcagaatgcgatgatgctttattgggaaaaatggttggagatataacttttccattgacagttccttccacggaaaaccattccatcacttcgtatag |
217 |
Q |
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| T |
27733092 |
attcagaatgcgatgatgctttattgggaaaaatggttggagatataacttttccattgacagttccttccacggaaaaccattccatcacttcgtatag |
27732993 |
T |
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| Q |
218 |
tgatcctgatgttgacaatagagagaaagagttcaattgtttggaaccatcagttgatttgtccgtagagcaaaaggactggggtgcgttagaaagttta |
317 |
Q |
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| T |
27732992 |
tgatcctgatgttgacaatagagagaaagagttcaattgtttggaaccatcagttgatttgtccgtagagcaaaaggactggggtgcgttagaaagttta |
27732893 |
T |
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| Q |
318 |
gatgactacaataacaatattactgatgatgt |
349 |
Q |
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| T |
27732892 |
gatgactacaataacaatattactgatgatgt |
27732861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 281
Target Start/End: Original strand, 28406260 - 28406395
Alignment:
| Q |
146 |
aaaaatggttggagatataacttttccattgacagttccttccacggaaaaccattccatcacttcgtatagtgatcctgatgttgacaatagagagaaa |
245 |
Q |
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| T |
28406260 |
aaaaatggttggcgatataacctttccattggctgttccttccatggaaaaccattacaacactttatttagtgatcctgattttgagacatgagacaaa |
28406359 |
T |
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| Q |
246 |
gagttcaattgtttggaaccatcagttgatttgtcc |
281 |
Q |
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| T |
28406360 |
gagtttagtcatttggaaccaccaattgatttgtcc |
28406395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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