View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285-Insertion-14 (Length: 292)

Name: NF4285-Insertion-14
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285-Insertion-14
NF4285-Insertion-14
[»] chr1 (1 HSPs)
chr1 (1-282)||(30855477-30855764)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 30855477 - 30855764
Alignment:
Q  1 ctccatgtttcatcctcatggttaatatatctcatcttaactagttgacacctctttctttgtttctattcgaaccccaccgcaaagaatttaacataca 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |    
T  30855477 ctccatgtttcatcctcgtggttaatatatctcatcttaactagttgatacctcttcctttgattctattcgaaccccaccgcaaagaatttaacatata 30855576  T
Q  101 ttgaat-----ctcctaaattagacactataagaaaagaactcatacaatacattagaattgattgaggaaattatttaatatgtacatctttgtccact 195  Q
    ||||||     |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  30855577 ttgaatttcatctccaaaattagacgctataagaaaagaactcatgcaatacattagaattgattgaggaaattatttaatatgtacatctatgtccgct 30855676  T
Q  196 tttgataaatgtttacttgacctaactttgtatgcgcttccaagtatgatcacatatatagttaaaatagccttc-ttttctatcaaa 282  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  30855677 tttgataaatgtttacttgacctaactttatatgcgcttccaagtacgatcacatatatagttaaaatagccttctttttctatcaaa 30855764  T

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