View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285-Insertion-18 (Length: 103)
Name: NF4285-Insertion-18
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285-Insertion-18 |
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| [»] scaffold0286 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 103; Significance: 9e-52; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 103; E-Value: 9e-52
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12471 - 12573
Alignment:
| Q |
1 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtg |
100 |
Q |
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| T |
12471 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtg |
12570 |
T |
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| Q |
101 |
gtt |
103 |
Q |
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||| |
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| T |
12571 |
gtt |
12573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 9e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 9e-52
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2170790 - 2170688
Alignment:
| Q |
1 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170790 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtg |
2170691 |
T |
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| Q |
101 |
gtt |
103 |
Q |
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||| |
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| T |
2170690 |
gtt |
2170688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 2187840 - 2187938
Alignment:
| Q |
5 |
cttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtt |
103 |
Q |
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|||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2187840 |
cttgctaaacttgttagttctttacaaataacagcatttgcatgaagatggaggcaccgagtttagtttggcaggaagtgctagggttccagagtggtt |
2187938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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