View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285-Insertion-19 (Length: 119)
Name: NF4285-Insertion-19
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285-Insertion-19 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 1e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 29254555 - 29254436
Alignment:
| Q |
1 |
aactttatactcataatatatagaattaaattaacaacaaaaaa-tcaaatcgaatcgtagttaacatgcctgccaaccagcttcaatggtgttcatgtc |
99 |
Q |
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| T |
29254555 |
aactttatactcataatatatagaattaaattaacaacaaaaaaatcaaatcgaatcgtagttaacatgcctgccaaccagcttcaatggtgttcatgtc |
29254456 |
T |
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| Q |
100 |
tttcccaaatgtaccagaga |
119 |
Q |
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||| |||||||||||||||| |
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| T |
29254455 |
ttttccaaatgtaccagaga |
29254436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 29234712 - 29234684
Alignment:
| Q |
65 |
catgcctgccaaccagcttcaatggtgtt |
93 |
Q |
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| T |
29234712 |
catgcctgccaaccagcttcaatggtgtt |
29234684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 30918792 - 30918824
Alignment:
| Q |
61 |
ttaacatgcctgccaaccagcttcaatggtgtt |
93 |
Q |
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| T |
30918792 |
ttaacatgcctgccaaccagcttcaatggtgtt |
30918824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 94
Target Start/End: Original strand, 30928627 - 30928658
Alignment:
| Q |
63 |
aacatgcctgccaaccagcttcaatggtgttc |
94 |
Q |
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| T |
30928627 |
aacatgcctgccaaccagcttcaatggtgttc |
30928658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 30908695 - 30908727
Alignment:
| Q |
61 |
ttaacatgcctgccaaccagcttcaatggtgtt |
93 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
30908695 |
ttaacatacctgccaaccagcttcaatggtgtt |
30908727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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