View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285-Insertion-2 (Length: 54)

Name: NF4285-Insertion-2
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285-Insertion-2
NF4285-Insertion-2
[»] chr2 (5 HSPs)
chr2 (1-54)||(33060055-33060108)
chr2 (1-40)||(33046631-33046670)
chr2 (2-42)||(33068190-33068230)
chr2 (2-42)||(33076533-33076573)
chr2 (6-42)||(33086215-33086251)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 6e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-23
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33060108 - 33060055
Alignment:
Q  1 ttttggcttcctctatgtccaagattttgttccaccatttctctatttgtgcat 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33060108 ttttggcttcctctatgtccaagattttgttccaccatttctctatttgtgcat 33060055  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33046670 - 33046631
Alignment:
Q  1 ttttggcttcctctatgtccaagattttgttccaccattt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33046670 ttttggcttcctctatgtccaagattttgttccaccattt 33046631  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 33068230 - 33068190
Alignment:
Q  2 tttggcttcctctatgtccaagattttgttccaccatttct 42  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  33068230 tttggcttccttaatgtccaagattttgttccaccatttct 33068190  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 33076573 - 33076533
Alignment:
Q  2 tttggcttcctctatgtccaagattttgttccaccatttct 42  Q
    ||||| |||||  ||||||||||||||||||||||||||||    
T  33076573 tttggtttccttaatgtccaagattttgttccaccatttct 33076533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 33086251 - 33086215
Alignment:
Q  6 gcttcctctatgtccaagattttgttccaccatttct 42  Q
    |||||||| |||||||||||||| |||||||||||||    
T  33086251 gcttcctcaatgtccaagattttattccaccatttct 33086215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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