View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285-Insertion-20 (Length: 91)

Name: NF4285-Insertion-20
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285-Insertion-20
NF4285-Insertion-20
[»] chr3 (21 HSPs)
chr3 (2-91)||(14896961-14897050)
chr3 (1-89)||(18164477-18164568)
chr3 (4-89)||(19413517-19413605)
chr3 (25-91)||(19460874-19460940)
chr3 (1-91)||(19436216-19436309)
chr3 (4-91)||(18115283-18115373)
chr3 (1-69)||(18102778-18102849)
chr3 (4-91)||(19392476-19392566)
chr3 (27-69)||(18015441-18015483)
chr3 (34-91)||(17728272-17728329)
chr3 (25-86)||(18107791-18107852)
chr3 (34-91)||(19029501-19029558)
chr3 (27-91)||(16676551-16676615)
chr3 (4-91)||(19333315-19333405)
chr3 (27-91)||(19350774-19350838)
chr3 (4-87)||(19399062-19399148)
chr3 (15-91)||(25462403-25462479)
chr3 (27-86)||(19419336-19419395)
chr3 (27-69)||(19375038-19375080)
chr3 (25-82)||(19423952-19424009)
chr3 (27-67)||(19354204-19354244)
[»] chr6 (1 HSPs)
chr6 (4-91)||(13667472-13667562)
[»] chr4 (1 HSPs)
chr4 (1-91)||(15531699-15531792)
[»] chr8 (1 HSPs)
chr8 (27-91)||(8458850-8458914)
[»] scaffold2156 (1 HSPs)
scaffold2156 (4-61)||(531-591)
[»] scaffold0640 (1 HSPs)
scaffold0640 (4-61)||(4739-4799)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 2e-39; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-39
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 14897050 - 14896961
Alignment:
Q  2 ttttggtcggatatcaatgtggtccgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14897050 ttttggtcggatatcaatatggtccgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactactgaaagagttacaaaact 14896961  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 18164477 - 18164568
Alignment:
Q  1 gttttggtcggatatcaatgtggtc---cgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaa 89  Q
    |||||||||||||||||| ||||||   |||||||||||||||||  ||||||||||||||||||||||||| ||  | |||||||||||||    
T  18164477 gttttggtcggatatcaacgtggtcaaccgaaaaagattgttgtgtatgggaaggagtccactgcgacaacattaccggaagagttacaaaa 18164568  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 19413517 - 19413605
Alignment:
Q  4 ttggtcggatatcaatgtggtc---cgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaa 89  Q
    ||||| ||||||||| ||||||   ||||||||||||||||| |||||||||||||||||||||||||| ||  | |||||||||||||    
T  19413517 ttggttggatatcaacgtggtcaaccgaaaaagattgttgtggttgggaaggagtccactgcgacaacattaccggaagagttacaaaa 19413605  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 19460874 - 19460940
Alignment:
Q  25 ccgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||    
T  19460874 ccgaaatagattgttgtgcttgggaaggagtccactgtgacaacattactggaagagttacaaaact 19460940  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 19436216 - 19436309
Alignment:
Q  1 gttttggtcggatatcaatgtggtc---cgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    |||||||||||||||||| ||||||   ||||||||||||||||||||||  ||| |||||||| ||||||| ||  | |||||||||||||||    
T  19436216 gttttggtcggatatcaacgtggtcaaccgaaaaagattgttgtgcttggagaggtgtccactgtgacaacattaccggaagagttacaaaact 19436309  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 18115283 - 18115373
Alignment:
Q  4 ttggtcggatatcaatgtggtc---cgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    |||||||||||| || ||||||   ||||| |||||||||||||||||||||||||||||| || |||| ||  | |||||||||||||||    
T  18115283 ttggtcggatattaacgtggtcaaccgaaatagattgttgtgcttgggaaggagtccactgtgagaacattaccggaagagttacaaaact 18115373  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 18102778 - 18102849
Alignment:
Q  1 gttttggtcggatatcaatgtggtc---cgaaaaagattgttgtgcttgggaaggagtccactgcgacaaca 69  Q
    ||||||||||||| |||| ||||||   | ||||||||| |||||||||||||||||||||||| |||||||    
T  18102778 gttttggtcggatttcaacgtggtcaaccaaaaaagatttttgtgcttgggaaggagtccactgtgacaaca 18102849  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 19392476 - 19392566
Alignment:
Q  4 ttggtcggatatcaatgtggtccg---aaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    |||||||||||||||||||| |     ||||||||||||||||||||||||| ||||| || ||||||||||    |||||||||||||||    
T  19392476 ttggtcggatatcaatgtggacaacaaaaaaagattgttgtgcttgggaaggtgtccattgtgacaacactacctgaagagttacaaaact 19392566  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 18015441 - 18015483
Alignment:
Q  27 gaaaaagattgttgtgcttgggaaggagtccactgcgacaaca 69  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  18015441 gaaaaagattgttgttcttgggaaggagtccactgtgacaaca 18015483  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 17728329 - 17728272
Alignment:
Q  34 attgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    ||||||||||||||||||| |||||||| ||||||| || || |||||||||| ||||    
T  17728329 attgttgtgcttgggaaggtgtccactgtgacaacattactggaagagttacagaact 17728272  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 18107791 - 18107852
Alignment:
Q  25 ccgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttaca 86  Q
    ||||||||||||||||||  ||||||| ||||||||| ||||||| ||| | ||||||||||    
T  18107791 ccgaaaaagattgttgtgtatgggaagaagtccactgtgacaacattatcggaagagttaca 18107852  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 19029558 - 19029501
Alignment:
Q  34 attgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    ||||||||||||||||||| |||||||| ||||||| || || |||||||||| ||||    
T  19029558 attgttgtgcttgggaaggtgtccactgtgacaacattactggaagagttacagaact 19029501  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 16676551 - 16676615
Alignment:
Q  27 gaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    |||||||| |||||||  |||||||||||||| |||||||||| ||  | |||||||||||||||    
T  16676551 gaaaaagactgttgtgtatgggaaggagtccaatgcgacaacattaccggaagagttacaaaact 16676615  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 19333315 - 19333405
Alignment:
Q  4 ttggtcggatatcaatgtggtcc---gaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    ||||||||||||||| ||||||    |||||||||||||| |  ||||||||||||| ||||||||||| ||  | |||||||||| ||||    
T  19333315 ttggtcggatatcaacgtggtcaactgaaaaagattgttgcgtatgggaaggagtccgctgcgacaacattaccggaagagttacagaact 19333405  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 19350774 - 19350838
Alignment:
Q  27 gaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    ||||||||| ||||||  ||||| ||||||||||||||||| | || || |||||||||||||||    
T  19350774 gaaaaagatagttgtgtatgggacggagtccactgcgacaatattactggaagagttacaaaact 19350838  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 19399062 - 19399148
Alignment:
Q  4 ttggtcggatatcaatgtggtc---cgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaa 87  Q
    ||||||||||||||| ||||||   | ||||||||||||| ||||||||||||||| | || ||||||| || | | ||||||||||    
T  19399062 ttggtcggatatcaacgtggtcaaccaaaaaagattgttgcgcttgggaaggagtctattgtgacaacattactaacagagttacaa 19399148  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 25462403 - 25462479
Alignment:
Q  15 tcaatgtggtccgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    ||||||||||| ||||||||||||||||| |||||||| |||  ||| ||||||| ||  | | |||||||||||||    
T  25462403 tcaatgtggtctgaaaaagattgttgtgcatgggaaggtgtcgtctgtgacaacattaccggacgagttacaaaact 25462479  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 19419336 - 19419395
Alignment:
Q  27 gaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttaca 86  Q
    ||||||||||||||||  ||||||||||||||||| ||||||| ||  | ||||||||||    
T  19419336 gaaaaagattgttgtgtatgggaaggagtccactgtgacaacattaccggaagagttaca 19419395  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 19375038 - 19375080
Alignment:
Q  27 gaaaaagattgttgtgcttgggaaggagtccactgcgacaaca 69  Q
    ||||||||||||||| |||||||||||||| |||| |||||||    
T  19375038 gaaaaagattgttgttcttgggaaggagtctactgtgacaaca 19375080  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 19423952 - 19424009
Alignment:
Q  25 ccgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagt 82  Q
    ||||| |||||||||||||  ||||||||||||||||| | |||| ||||| ||||||    
T  19423952 ccgaagaagattgttgtgcaagggaaggagtccactgcaataacattattggaagagt 19424009  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 19354204 - 19354244
Alignment:
Q  27 gaaaaagattgttgtgcttgggaaggagtccactgcgacaa 67  Q
    ||||||||||||||| ||||||||| ||||||||| |||||    
T  19354204 gaaaaagattgttgttcttgggaagaagtccactgtgacaa 19354244  T

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Target: chr6 (Bit Score: 45; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 13667562 - 13667472
Alignment:
Q  4 ttggtcggatatcaatgtggtc---cgaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    ||||||||||||||| ||||||   |||||||  ||||||||||||||||||||||||||| ||||||| ||  | |||||||||||||||    
T  13667562 ttggtcggatatcaacgtggtcaaccgaaaaaagttgttgtgcttgggaaggagtccactgtgacaacattaccggaagagttacaaaact 13667472  T

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Target: chr4 (Bit Score: 36; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 15531699 - 15531792
Alignment:
Q  1 gttttggtcggatatcaatgtggtcc---gaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    ||||||||||||| |||||||||||    |||||| ||||||||||||||| ||||||||| || |||||||  |  | |||||||||||||||    
T  15531699 gttttggtcggatttcaatgtggtctattgaaaaaaattgttgtgcttggggaggagtccattgtgacaacatgaccggaagagttacaaaact 15531792  T

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Target: chr8 (Bit Score: 33; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 8458850 - 8458914
Alignment:
Q  27 gaaaaagattgttgtgcttgggaaggagtccactgcgacaacactattgaaagagttacaaaact 91  Q
    ||||||||||||||||| ||| ||||||||||||| |||| || || ||  ||||||||||||||    
T  8458850 gaaaaagattgttgtgcgtggaaaggagtccactgtgacagcattactggcagagttacaaaact 8458914  T

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Target: scaffold2156 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 591 - 531
Alignment:
Q  4 ttggtcggatatcaatgtggtc---cgaaaaagattgttgtgcttgggaaggagtccactg 61  Q
    ||||| ||||||||| ||||||   |||||||||||||||||| |||||||||||| ||||    
T  591 ttggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactg 531  T

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Target: scaffold0640 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 4739 - 4799
Alignment:
Q  4 ttggtcggatatcaatgtggtc---cgaaaaagattgttgtgcttgggaaggagtccactg 61  Q
    ||||| ||||||||| ||||||   |||||||||||||||||| |||||||||||| ||||    
T  4739 ttggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactg 4799  T

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