View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285-Insertion-23 (Length: 70)
Name: NF4285-Insertion-23
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285-Insertion-23 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 3e-32; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-32
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 971247 - 971178
Alignment:
| Q |
1 |
tatccagcttcagttaaaaatagtaaattattgaaataaattagaatatgtataatagttagttttacta |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
971247 |
tatccagcttcagttaaaaatagtaaattattgaaataaattagaatatgtataatagttagttttacta |
971178 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-30
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 948954 - 948885
Alignment:
| Q |
1 |
tatccagcttcagttaaaaatagtaaattattgaaataaattagaatatgtataatagttagttttacta |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
948954 |
tatccagcttcagttaaaaatagtaaattattgaaataaattagaatatgtataatagtttgttttacta |
948885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-30
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 959917 - 959848
Alignment:
| Q |
1 |
tatccagcttcagttaaaaatagtaaattattgaaataaattagaatatgtataatagttagttttacta |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
959917 |
tatccagcttcagttaaaaatagtaaattattgaaataaattagaatatgtataatagtttgttttacta |
959848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-23
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 941968 - 941899
Alignment:
| Q |
1 |
tatccagcttcagttaaaaatagtaaattattgaaataaattagaatatgtataatagttagttttacta |
70 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
941968 |
tatccagcttcaattaaaaacagtaaattattgaaataaattagaatctgtgtaatagttagttttacta |
941899 |
T |
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