View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4285-Insertion-24 (Length: 65)
Name: NF4285-Insertion-24
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285-Insertion-24 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 59; Significance: 9e-26; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 13472977 - 13472919
Alignment:
| Q |
7 |
acagggatttcctctgttaagatgtttttcctcaatattaatgcttgaagttctacaag |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13472977 |
acagggatttcctctgttaagatgtttttcctcaatattaatgcttgaagttctacaag |
13472919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 13892982 - 13892926
Alignment:
| Q |
9 |
agggatttcctctgttaagatgtttttcctcaatattaatgcttgaagttctacaag |
65 |
Q |
| |
|
|||||| |||||||||||| |||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
13892982 |
agggatctcctctgttaagctgttgttcctcaatagtaatgcttgcagttctacaag |
13892926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 14084754 - 14084810
Alignment:
| Q |
9 |
agggatttcctctgttaagatgtttttcctcaatattaatgcttgaagttctacaag |
65 |
Q |
| |
|
|||||| |||||||||||| |||| ||||| || | ||||||||||||||||||||| |
|
|
| T |
14084754 |
agggatctcctctgttaagctgttgttccttaacagtaatgcttgaagttctacaag |
14084810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 13911910 - 13911966
Alignment:
| Q |
9 |
agggatttcctctgttaagatgtttttcctcaatattaatgcttgaagttctacaag |
65 |
Q |
| |
|
|||||| ||| |||||||| | || |||||||||| ||||||||| ||||||||||| |
|
|
| T |
13911910 |
agggatctcccctgttaagctattgttcctcaatagtaatgcttgcagttctacaag |
13911966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 14047437 - 14047493
Alignment:
| Q |
9 |
agggatttcctctgttaagatgtttttcctcaatattaatgcttgaagttctacaag |
65 |
Q |
| |
|
|||||| ||| |||||||| | || |||||||||||||||||| | ||||||||||| |
|
|
| T |
14047437 |
agggatctcccctgttaagctattgttcctcaatattaatgctcgcagttctacaag |
14047493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University