View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285-Insertion-28 (Length: 174)
Name: NF4285-Insertion-28
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285-Insertion-28 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 4e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 4936876 - 4936708
Alignment:
| Q |
6 |
caaattataaataacatgtttgtgtcagttacaagagaatggaatgttctaaataacacaaatggttcctcaactattacaatcacaagttggcaagaca |
105 |
Q |
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| T |
4936876 |
caaattataaataacatgtttgtgtcagttacaagagaatggaatgttctaaataacacaaatggttcctcaactattacaatcacaagttggcaagaca |
4936777 |
T |
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| Q |
106 |
caaatgaaatggttgatggaataatctgattctatatattcactccaaacgaacttcataccactgaac |
174 |
Q |
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| T |
4936776 |
caaatgaaatggttgatggaataatatgattctatatattcactccaaacgaaattcataccactgaac |
4936708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 4952581 - 4952413
Alignment:
| Q |
6 |
caaattataaataacatgtttgtgtcagttacaagagaatggaatgttctaaataacacaaatggttcctcaactattacaatcacaagttggcaagaca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952581 |
caaattataaataacatgtttgtgtcagttacaagagaatggaatgttctaaataacacaaatggttcctcaactattacaatcacaagttggcaagaca |
4952482 |
T |
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| Q |
106 |
caaatgaaatggttgatggaataatctgattctatatattcactccaaacgaacttcataccactgaac |
174 |
Q |
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| T |
4952481 |
caaatgaaatggttgatggaataatttgattctatatattcactccaaacgaatttcataccactgaac |
4952413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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