View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285-Insertion-32 (Length: 269)
Name: NF4285-Insertion-32
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285-Insertion-32 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 4078375 - 4078625
Alignment:
| Q |
19 |
caatgaaattgaagttgaaaaactaagttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaagctctatct |
118 |
Q |
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| T |
4078375 |
caatgaaattgaagttgaaaaactatgttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaaactctatct |
4078474 |
T |
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| Q |
119 |
tttgctaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaacctgttcatctagtgaatgttgcaaagttagcagttacagattat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078475 |
tttgctaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaacctgttcatctagtgaatgttgcaaagttagcagttacagattat |
4078574 |
T |
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| Q |
219 |
aaagcaaaatcactcctgacgttgatgcataaagttt-aatggctagggat |
268 |
Q |
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| T |
4078575 |
aaagcaaaatcactcctgatgttgatgcataaagtttaaatggctagggat |
4078625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 4101128 - 4101379
Alignment:
| Q |
19 |
caatgaaattgaagttgaaaaactaagttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaagctctatct |
118 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4101128 |
caatgaaattgaagttgaaaaactatgttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaaactctatct |
4101227 |
T |
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| Q |
119 |
tttgctaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaacctgttcatctagtgaatgttgcaaagttagcagttacagattat |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4101228 |
tttgttaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaatctgttcatctagtgaatgttgcaaagttagcagttacagattat |
4101327 |
T |
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| Q |
219 |
aaagcaaaatcactcctgacgttgatgcataaagttt-aatggctagggata |
269 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
4101328 |
aaagcaaaatcactcctgatgttgatgcataaagtttaaatggctagggata |
4101379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 19569000 - 19569053
Alignment:
| Q |
57 |
aaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaag |
110 |
Q |
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|||||| |||||| | |||||||||| ||||||||| ||||||||||| ||||| |
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| T |
19569000 |
aaattttctaggcgaggacctattcgactagcgaatttgctaatttttgaaaag |
19569053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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