View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285-Insertion-35 (Length: 195)
Name: NF4285-Insertion-35
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285-Insertion-35 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 80; Significance: 9e-38; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 9e-38
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 25361579 - 25361675
Alignment:
| Q |
97 |
cctacaatatccaatagagatgttacataaagtactattattgagtaactacgaattgaaataaaatagaagacaaacaggctcacatcngatggtaca |
195 |
Q |
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| T |
25361579 |
cctacaatatccaatagagatgttacataaagt-ctattattgagtaactacgaattgaaataaaat-gaagacaaacaggctcacatcagatggtaca |
25361675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 25361490 - 25361531
Alignment:
| Q |
8 |
tcttttgaaggtcaaggttctcaatctatcactagtccttac |
49 |
Q |
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| T |
25361490 |
tcttttgaaggtcaaggttctcaatctatcactagtccttac |
25361531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25349606 - 25349651
Alignment:
| Q |
1 |
catatactcttttgaaggtcaaggttctcaatctatcactagtcct |
46 |
Q |
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| T |
25349606 |
catatacttttttgaaggccaaggttctcaatctattactagtcct |
25349651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25356814 - 25356859
Alignment:
| Q |
1 |
catatactcttttgaaggtcaaggttctcaatctatcactagtcct |
46 |
Q |
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| T |
25356814 |
catatacttttttgaaggccaaggttctcaatctattactagtcct |
25356859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 25352146 - 25352190
Alignment:
| Q |
2 |
atatactcttttgaaggtcaaggttctcaatctatcactagtcct |
46 |
Q |
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| T |
25352146 |
atatacttttttgaaggccaaggttctcaatctattactagtcct |
25352190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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