View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_10 (Length: 472)
Name: NF4285_high_10
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 212 - 465
Target Start/End: Original strand, 50096156 - 50096410
Alignment:
| Q |
212 |
ttatgaaatctaactttgagggttgacgttttgaaaaggagaaaaaactaacataataatttaacattttatatttgaagnnnnnnnnctttcggtaggt |
311 |
Q |
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| T |
50096156 |
ttatgaaatctaactttgagggttgacgttttgaaaaggagaaaagactaacataacaatttaacattttacatttaaggaaaaaaaactttcggtagat |
50096255 |
T |
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| Q |
312 |
gtttttattgtattttgagcaatttagagggctcatagagaaactaccatacatgtataggaacaagggtgaattggttttttaaggggttgtctagttc |
411 |
Q |
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| T |
50096256 |
gtttttattgtattttgagcaatttagagggctcatagagaaactaccatacatgtataggaacaagggtgaattgattttttaagaggttgtctagttc |
50096355 |
T |
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| Q |
412 |
aactagtttgagctaaaggtt-atgaattgaataggtccatcattcaagttgaga |
465 |
Q |
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| T |
50096356 |
aactagtttaagctaaaggttgatgaattgaataggtccatcattcaagttgaga |
50096410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 50095988 - 50096154
Alignment:
| Q |
15 |
cacagacagcttgaagtgttaataaagttgagtttagtgattaaaacttggtgtcctaatccaatagttctcacaattttgactccctttagtttagtgg |
114 |
Q |
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| T |
50095988 |
cacagacagcttgaagtgttaataaagttgagtttagtgattaaaacttggtgtcctaatccaatagttctcacaattttgactccctttagtttagtgg |
50096087 |
T |
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| Q |
115 |
ttaactcagcctggtgtgttgctctctcatagcccctaatccaatagaaaattatctcttggtaggt |
181 |
Q |
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| T |
50096088 |
ttaactcagcctggtgtgttgctctctcatagcccctaatccaatagaaaattatcttttggtaggt |
50096154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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