View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4285_high_12 (Length: 458)
Name: NF4285_high_12
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 38005484 - 38005924
Alignment:
| Q |
1 |
cttcgtcttcatcttcaaaattcttatacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005484 |
cttcgtcttcatcttcaaaattcttatacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttg |
38005583 |
T |
|
| Q |
101 |
cgagattttgttgtaaaacaactcgaatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005584 |
cgagattttgttgtaaaacaactcaaatgcaatgccgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaaca |
38005683 |
T |
|
| Q |
201 |
actatgtttagatcagtcgcactgtttttatttactactgctttagattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagctt |
300 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005684 |
acgatgtttagatcagtcgcaccgtttttatttactactgctttgaattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagctt |
38005783 |
T |
|
| Q |
301 |
caccggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactcc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005784 |
caccggcgcgtgagtttgtttcatgcgcgtatagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactcc |
38005883 |
T |
|
| Q |
401 |
ggcgattataggtaggaaacggaggacggtgagctggagat |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005884 |
ggcgattataggtaggaaacggaggacggtgagctggagat |
38005924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 26462329 - 26461889
Alignment:
| Q |
1 |
cttcgtcttcatcttcaaaattcttatacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttg |
100 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26462329 |
cttcatcttcatcttcgaaattcttatacatgtcaccatcttcaccagcccaaatcttacaaaagttacaaaaatcaatttttggtgaaacaggcatttc |
26462230 |
T |
|
| Q |
101 |
cgagattttgttgtaaaacaactcgaatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaaca |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26462229 |
agatattttgctgtaaaacaactcgaatgcaatgcctacgattcgagctcttcgtgttgaccgaacagtgccgtgtggctcaagcgaaggcgataaaaca |
26462130 |
T |
|
| Q |
201 |
actatgtttagatcagtcgcactgtttttatttactactgctttagattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagctt |
300 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||| |
|
|
| T |
26462129 |
acgatgtttagatcagttgcactgtttttattgtttactactttggattcatgatacacgctagggtgtgtcatgtcagggatagtaatggtaacggctt |
26462030 |
T |
|
| Q |
301 |
caccggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactcc |
400 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| || |
|
|
| T |
26462029 |
caccagcgcgtgacgttgtttcatgcgcgtagagagctaaaagaacagcttcaaacccggcttgcggttttctatcagcgacgcgtgagaggtaaacacc |
26461930 |
T |
|
| Q |
401 |
ggcgattataggtaggaaacggaggacggtgagctggagat |
441 |
Q |
| |
|
|||||| || || |||||||| ||||||||||| ||||||| |
|
|
| T |
26461929 |
ggcgataatcgggaggaaacgtaggacggtgagttggagat |
26461889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University