View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_14 (Length: 448)
Name: NF4285_high_14
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 38609291 - 38608848
Alignment:
| Q |
1 |
tctaccgtctctttgtaaagcttgtttgcattgtgtttattgcaaatataagttaatttcttcaaaatttgtatttaaacaacatgtttcgaaggaataa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38609291 |
tctatcgtctctttgtaaagcttgtttgcattgtgtttattgcaaatataagttaatttcttcaaaatttgtatttaaacaacatgttccgaaggaataa |
38609192 |
T |
|
| Q |
101 |
aatgatgttaggttattgtgtcgtcagtttatcaagttatatgaggcacattgctctttgtttgtgtgtcatatattattcgtaggttcaggtatcgttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38609191 |
aatgatgttaggttattgtgtcgtcagtttatcaagttatatgagtcacattgctctttgtttgtgtgtcatatattatttgtaggttcaggtatcgttc |
38609092 |
T |
|
| Q |
201 |
aaagtactgtcacaatatggtttgttatact-tttgcaaatgatactcgtgttttggtgacattttggtatgcattggcaaataagggtcttg------- |
292 |
Q |
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||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| |
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| T |
38609091 |
aaagtactgtcacaatatggtttgtgatactgattgccaatgatactcgtgctttggtgacattttggtatgtattggcaaataagggttttgttgatta |
38608992 |
T |
|
| Q |
293 |
-ttgattagctctctatggatatgctacgttgttcnnnnnnncctagtagttatttattctcatatcgtttcttaggttgcatatattgagggtgacttg |
391 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608991 |
tttgattagctctgtatggatatgctacgttgttctttttttcctagtagttatttattctcatatcgtttcttaggttgcatatattgagggtgacttg |
38608892 |
T |
|
| Q |
392 |
tttaaaccgaacactgtatgttctagttaggttgcatgtgatga |
435 |
Q |
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| T |
38608891 |
tttaaaccgaacaatgtatgttctagttaggttgcatgtgatga |
38608848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 38604248 - 38604036
Alignment:
| Q |
8 |
tctctttgtaaagcttgtttgcattgtgtttattgcaaatataagttaatttcttcaaaatttgtatttaaacaacatgtttcgaaggaataaaatgatg |
107 |
Q |
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||||| ||| || |||||||||||| |||| |||||| |||||| ||||||||||||||| | ||| ||| ||||||||||| ||| |||||||||| |
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| T |
38604248 |
tctctctgtgaaacttgtttgcattttgttaattgcagatataatttaatttcttcaaaactagtaattagacaacatgttttagagggataaaatgatc |
38604149 |
T |
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| Q |
108 |
ttaggttattgtgtcgtcagtttatcaagttatatgaggcacattgctctttgtttgtgtgtcatatattattcgtaggttcaggtatcgttcaaagtac |
207 |
Q |
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|||||| ||||| | |||| ||||||| ||||| || | | ||||| | | | |||||||| | || ||||| || |||| || || ||||||| ||||| |
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| T |
38604148 |
ttaggtcattgtattgtcaatttatcatgttatttgtgtcgcattg-tgtctatttgtgtgccgtaaattatacgcaggtccaagtgtcgttcagagtac |
38604050 |
T |
|
| Q |
208 |
tgtcacaatatggt |
221 |
Q |
| |
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| ||||||| |||| |
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| T |
38604049 |
tatcacaatttggt |
38604036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38609357 - 38609304
Alignment:
| Q |
1 |
tctaccgtctctttgtaaagcttgtttgcattgtgtttattgcaaatataagtt |
54 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609357 |
tctatcgtctctttgtaaagcttgtttgcattgtgtttattgcaaatataagtt |
38609304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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