View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_high_19 (Length: 419)

Name: NF4285_high_19
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_high_19
NF4285_high_19
[»] chr6 (13 HSPs)
chr6 (52-400)||(29645781-29646129)
chr6 (1-53)||(10521846-10521898)
chr6 (2-45)||(551170-551213)
chr6 (1-48)||(31654307-31654354)
chr6 (2-44)||(12343106-12343148)
chr6 (1-51)||(24618690-24618740)
chr6 (1-38)||(10521938-10521975)
chr6 (1-52)||(2315302-2315353)
chr6 (13-48)||(24618594-24618629)
chr6 (15-48)||(2315407-2315440)
chr6 (15-48)||(17751014-17751047)
chr6 (13-48)||(6299167-6299203)
chr6 (13-48)||(6305977-6306013)
[»] chr8 (25 HSPs)
chr8 (108-397)||(28726702-28726985)
chr8 (104-373)||(28700807-28701070)
chr8 (108-397)||(28711713-28711996)
chr8 (108-397)||(28719060-28719343)
chr8 (108-373)||(28731402-28731661)
chr8 (108-373)||(28644291-28644550)
chr8 (105-373)||(28625794-28626056)
chr8 (108-169)||(28636557-28636618)
chr8 (108-169)||(28653243-28653304)
chr8 (105-373)||(28740338-28740600)
chr8 (3-48)||(34229732-34229777)
chr8 (318-397)||(28636761-28636840)
chr8 (16-51)||(34229631-34229666)
chr8 (2-48)||(8243390-8243436)
chr8 (3-53)||(31159856-31159906)
chr8 (1-48)||(1880327-1880373)
chr8 (13-48)||(5033271-5033306)
chr8 (1-48)||(6296607-6296654)
chr8 (13-48)||(33841584-33841619)
chr8 (7-54)||(34541799-34541846)
chr8 (4-38)||(36766176-36766210)
chr8 (13-58)||(5667080-5667125)
chr8 (24-53)||(34229603-34229632)
chr8 (23-55)||(2581895-2581927)
chr8 (13-53)||(43844579-43844619)
[»] scaffold0591 (2 HSPs)
scaffold0591 (240-373)||(5228-5358)
scaffold0591 (108-169)||(5426-5487)
[»] chr1 (25 HSPs)
chr1 (1-52)||(4609085-4609136)
chr1 (3-51)||(9157401-9157449)
chr1 (1-52)||(1819487-1819538)
chr1 (1-48)||(48823887-48823934)
chr1 (3-53)||(5694887-5694937)
chr1 (6-51)||(15220810-15220855)
chr1 (1-54)||(46333942-46333995)
chr1 (1-42)||(47303484-47303525)
chr1 (1-48)||(28928781-28928828)
chr1 (1-51)||(29371367-29371417)
chr1 (2-44)||(49445001-49445043)
chr1 (13-45)||(9157306-9157338)
chr1 (2-38)||(34062221-34062257)
chr1 (5-52)||(28928864-28928911)
chr1 (5-52)||(32157618-32157665)
chr1 (2-37)||(36290428-36290463)
chr1 (13-52)||(36290517-36290556)
chr1 (13-48)||(48993910-48993945)
chr1 (13-48)||(49444906-49444941)
chr1 (2-44)||(8337941-8337983)
chr1 (13-51)||(29371478-29371516)
chr1 (1-38)||(19711192-19711229)
chr1 (1-45)||(37155135-37155180)
chr1 (1-45)||(7788329-7788373)
chr1 (1-33)||(48604964-48604996)
[»] chr3 (20 HSPs)
chr3 (1-51)||(47677344-47677394)
chr3 (1-48)||(43139711-43139758)
chr3 (1-48)||(49418693-49418740)
chr3 (1-51)||(29031803-29031853)
chr3 (1-48)||(33689265-33689312)
chr3 (1-48)||(49414512-49414559)
chr3 (2-44)||(1801585-1801627)
chr3 (1-51)||(18321740-18321790)
chr3 (1-51)||(30476473-30476523)
chr3 (13-51)||(55223222-55223260)
chr3 (15-51)||(33689166-33689202)
chr3 (1-37)||(39385777-39385813)
chr3 (13-48)||(1272559-1272594)
chr3 (1-52)||(29031712-29031763)
chr3 (13-48)||(45103102-45103137)
chr3 (1-52)||(55223321-55223372)
chr3 (15-53)||(30734390-30734428)
chr3 (1-51)||(47677254-47677304)
chr3 (7-51)||(1272492-1272536)
chr3 (13-45)||(1801442-1801474)
[»] chr2 (13 HSPs)
chr2 (1-51)||(14464554-14464604)
chr2 (1-48)||(2828586-2828633)
chr2 (13-51)||(14470582-14470620)
chr2 (3-45)||(2893968-2894010)
chr2 (2-44)||(6217314-6217356)
chr2 (15-51)||(45213912-45213948)
chr2 (1-48)||(14229442-14229488)
chr2 (1-44)||(15011369-15011412)
chr2 (13-48)||(38933697-38933732)
chr2 (2-44)||(29925660-29925702)
chr2 (1-42)||(2143961-2144002)
chr2 (5-38)||(2894056-2894089)
chr2 (2-38)||(38933599-38933635)
[»] chr7 (15 HSPs)
chr7 (1-53)||(30165336-30165388)
chr7 (2-38)||(4649332-4649368)
chr7 (231-271)||(49110057-49110097)
chr7 (1-52)||(4649411-4649462)
chr7 (1-48)||(27028795-27028842)
chr7 (1-48)||(41018230-41018277)
chr7 (2-44)||(29053404-29053446)
chr7 (102-163)||(49109931-49109992)
chr7 (13-48)||(11016979-11017014)
chr7 (2-45)||(34854700-34854743)
chr7 (13-48)||(42628405-42628440)
chr7 (2-45)||(45231859-45231902)
chr7 (1-50)||(25001347-25001396)
chr7 (2-38)||(29053326-29053362)
chr7 (2-38)||(42628307-42628343)
[»] chr5 (14 HSPs)
chr5 (1-48)||(28818919-28818966)
chr5 (1-48)||(3180062-3180109)
chr5 (1-48)||(26662401-26662448)
chr5 (1-48)||(26933996-26934043)
chr5 (2-44)||(2953204-2953246)
chr5 (1-51)||(16439227-16439277)
chr5 (2-44)||(3899845-3899887)
chr5 (13-54)||(16971254-16971295)
chr5 (1-53)||(6912294-6912346)
chr5 (13-48)||(2356381-2356416)
chr5 (13-48)||(2953300-2953335)
chr5 (2-44)||(16971150-16971192)
chr5 (13-51)||(32485659-32485697)
chr5 (13-42)||(12913913-12913942)
[»] chr4 (22 HSPs)
chr4 (1-48)||(47404587-47404634)
chr4 (1-53)||(24006151-24006203)
chr4 (1-48)||(50384107-50384154)
chr4 (2-44)||(42375016-42375058)
chr4 (2-44)||(47404675-47404717)
chr4 (1-51)||(55089995-55090045)
chr4 (1-51)||(55090085-55090135)
chr4 (1-54)||(31430457-31430510)
chr4 (2-48)||(24006072-24006118)
chr4 (4-49)||(19184551-19184596)
chr4 (1-38)||(55089889-55089926)
chr4 (15-51)||(25617971-25618007)
chr4 (1-48)||(40789268-40789315)
chr4 (13-48)||(42375120-42375155)
chr4 (13-48)||(53954720-53954755)
chr4 (3-38)||(54716361-54716396)
chr4 (2-44)||(31430548-31430590)
chr4 (1-50)||(40789179-40789228)
chr4 (1-50)||(45591410-45591459)
chr4 (1-30)||(45591491-45591520)
chr4 (3-51)||(28693922-28693970)
chr4 (1-45)||(52028554-52028598)
[»] scaffold1033 (1 HSPs)
scaffold1033 (1-49)||(2302-2350)
[»] scaffold1029 (1 HSPs)
scaffold1029 (1-49)||(2302-2350)
[»] scaffold0047 (2 HSPs)
scaffold0047 (2-44)||(63763-63805)
scaffold0047 (1-38)||(63846-63883)
[»] scaffold0180 (1 HSPs)
scaffold0180 (15-50)||(19113-19148)
[»] scaffold0016 (2 HSPs)
scaffold0016 (15-48)||(49696-49729)
scaffold0016 (2-38)||(49793-49829)
[»] scaffold0586 (1 HSPs)
scaffold0586 (13-53)||(7157-7196)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 52 - 400
Target Start/End: Complemental strand, 29646129 - 29645781
Alignment:
Q  52 gagtaatgactgaccagctagctaataagatcttatcagtattcaaggcaatcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgc 151  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29646129 gagtagtgactaaccagctagctaataagatcttatcagtattcaaggcaatcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgc 29646030  T
Q  152 aacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcatgaggaatgattgaacaattaagcactgagtgagaggcaagaagagca 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29646029 aacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcatgaggaatgattgaacaattaagcagtgagtgagaggcaagaagagca 29645930  T
Q  252 agaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagacgagacacgatgtcgtcggccgagagttgagcacctttaccagcttttt 351  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  29645929 agaatgcgatccaacattttgaaagcttttggattgttaatgttggaaagacgggacacgatgtcgtcggccgagagttgagcacctttaccggcttttt 29645830  T
Q  352 gcaacacttcaaaaacaccaagatcaattgaacattggagtgccatggg 400  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29645829 gcaacacttcaaaaacaccaagatcaattgcacattggagtgccatggg 29645781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10521898 - 10521846
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 53  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  10521898 acattgtgattggccaatgtcaccaaactctatgtcacccaagtgctatccga 10521846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 551213 - 551170
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagtg 45  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||    
T  551213 cattgtgattgaccaatgtcacccaactctatgccacccaagtg 551170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31654354 - 31654307
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| |||||||||||||||||||| |||| |||||||||    
T  31654354 acattgtgattggccaatgtcacccaactctatatcacccaagtgcta 31654307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 12343148 - 12343106
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  12343148 cattgtgattgactaatgtcacccaactctatgtcacccaagt 12343106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24618690 - 24618740
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||  ||| |||||||||||||||||||| ||||||||||||    
T  24618690 acattgtgattggtcaacgtcacccaactctatgtcacccaagtgctatcc 24618740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10521938 - 10521975
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10521938 acattgtgattgaccaatgtcactcaactctatgtcac 10521975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2315353 - 2315302
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 52  Q
    ||||||||||||| |||||||||||||||   |||||||||| |||||||||    
T  2315353 acattgtgattgatcaatgtcacccaacttattgtcacacaaatgctatccg 2315302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 24618629 - 24618594
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  24618629 accaatgtcacccaactctatgtcactcaagtgcta 24618594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 2315407 - 2315440
Alignment:
Q  15 caatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||| |||||||||||||||||||||||    
T  2315407 caatgtcacctaactctatgtcacacaagtgcta 2315440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 17751014 - 17751047
Alignment:
Q  15 caatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||| |||||||||||||||||||||||||||||    
T  17751014 caatatcacccaactctatgtcacacaagtgcta 17751047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 6299203 - 6299167
Alignment:
Q  13 accaatgtcacccaactc-tatgtcacacaagtgcta 48  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6299203 accaatgtcacccaactcttatgtcacacaagtgcta 6299167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 6306013 - 6305977
Alignment:
Q  13 accaatgtcacccaactc-tatgtcacacaagtgcta 48  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6306013 accaatgtcacccaactcttatgtcacacaagtgcta 6305977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 108 - 397
Target Start/End: Original strand, 28726702 - 28726985
Alignment:
Q  108 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcatgag 207  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||   ||| | ||| |    ||   | ||||||||||       
T  28726702 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaa---gcttttgttcatctt 28726798  T
Q  208 gaatgattgaacaattaagcactgagtgagaggcaagaagagcaagaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagacgaga 307  Q
    |||||||  |||| || | |||    || || ||||||||| |||||||||||||||||||||||  ||| ||  ||||||   ||  ||||||||| ||    
T  28726799 gaatgatcaaacactttaacacatcatgtgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaagattgt---tgcaggaaagacggga 28726895  T
Q  308 cacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaagatcaattgaacattggagtgccat 397  Q
    | | || || ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| ||| | | |||||||||||    
T  28726896 cgcaatctcatcggcagagagttgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccat 28726985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 104 - 373
Target Start/End: Original strand, 28700807 - 28701070
Alignment:
Q  104 caagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||   |||   ||| ||   ||   | |||||||||    
T  28700807 caagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctacgaaatgatccaa---gcttttgttca 28700903  T
Q  204 tgaggaatgattgaacaattaagcactgagtgagaggcaagaagagcaagaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagac 303  Q
    |   ||||||   |||| || | |||    || || |||||||||||||||||||||||||||||||||  ||| || |||   ||| ||   |||| ||    
T  28700904 tcttgaatgaccaaacactttaacacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcagga---ttgctgcaagaaatac 28701000  T
Q  304 gagacacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 373  Q
    | ||| | || || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  28701001 gcgacgcaatctcatcggcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaag 28701070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 397
Target Start/End: Original strand, 28711713 - 28711996
Alignment:
Q  108 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcatgag 207  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||   ||| | ||| |    ||   | |||| |||||       
T  28711713 ggtcctaatgaaacgccatcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaa---gcttttcttcatctt 28711809  T
Q  208 gaatgattgaacaattaagcactgagtgagaggcaagaagagcaagaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagacgaga 307  Q
    |||||||  |||| || | |||    || |||||||||| |||||||||||||||||||||||||  ||| ||  ||||||   ||  ||||||||| ||    
T  28711810 gaatgatcaaacactttaacacatcatgtgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaagattgt---tgcaggaaagacggga 28711906  T
Q  308 cacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaagatcaattgaacattggagtgccat 397  Q
    | | || || ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| ||| | | |||||||||||    
T  28711907 cgcaatctcatcggcagagagttgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccat 28711996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 397
Target Start/End: Original strand, 28719060 - 28719343
Alignment:
Q  108 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcatgag 207  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||   ||| | ||| |    ||   | |||| |||||       
T  28719060 ggtcctaatgaaacgccatcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaa---gcttttcttcatctt 28719156  T
Q  208 gaatgattgaacaattaagcactgagtgagaggcaagaagagcaagaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagacgaga 307  Q
    |||||||  |||| || | |||    || |||||||||| |||||||||||||||||||||||||  ||| ||  ||||||   ||  ||||||||| ||    
T  28719157 gaatgatcaaacactttaacacatcatgtgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaagattgt---tgcaggaaagacggga 28719253  T
Q  308 cacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaagatcaattgaacattggagtgccat 397  Q
    | | || || ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| ||| | | |||||||||||    
T  28719254 cgcaatctcatcggcagagagttgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccat 28719343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 373
Target Start/End: Original strand, 28731402 - 28731661
Alignment:
Q  108 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcatgag 207  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||   ||| | ||| ||   ||   | ||||||||||       
T  28731402 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaa---gcttttgttcatctt 28731498  T
Q  208 gaatgattgaacaattaagcactgagtgagaggcaagaagagcaagaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagacgaga 307  Q
    ||||||   |||| || | |||    || || ||||||||| |||||||||||||||||||||||  ||| || |||   ||| ||   |||| ||| ||    
T  28731499 gaatgaacaaacactttaacacatcatgtgatgcaagaagaacaagaatgcgatccaacattttgggagcatcagga---ttgctgcaagaaatacgcga 28731595  T
Q  308 cacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 373  Q
    | | || || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28731596 cgcaatctcatcggcagagagttgagcacctttaccagctttttgcaacacatcaaaaacaccaag 28731661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 108 - 373
Target Start/End: Original strand, 28644291 - 28644550
Alignment:
Q  108 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcatgag 207  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||   ||| | ||| |    ||   | ||||||||||       
T  28644291 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaa---gcttttgttcatctt 28644387  T
Q  208 gaatgattgaacaattaagcactgagtgagaggcaagaagagcaagaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagacgaga 307  Q
    ||||||   |||| || | |||    || |||||||||| |||||||||||||||||||||||||  ||| || |||   ||| ||   |||| ||| ||    
T  28644388 gaatgaccaaacactttaacacatcatgtgaggcaagaacagcaagaatgcgatccaacattttgggagcatcagga---ttgctgcaagaaatacgcga 28644484  T
Q  308 cacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 373  Q
    ||| || || ||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  28644485 cacaatctcatcggcagagagttgagcacctttaccagttttttgcaacacatcaaatacaccaag 28644550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 373
Target Start/End: Original strand, 28625794 - 28626056
Alignment:
Q  105 aagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcat 204  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||   ||| | ||| ||   ||   | ||||||||||    
T  28625794 aagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaa---gcttttgttcat 28625890  T
Q  205 gaggaatgattgaacaattaagcactgagtgagaggcaagaagagcaagaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagacg 304  Q
       |||| |   |||| || | |||    || || ||||||||| |||||||||||||||||||||||  ||| || |||||| ||      |||| |||    
T  28625891 cttgaatcaccaaacactttaacacatcatgtgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaggattgctgcaa---gaaatacg 28625987  T
Q  305 agacacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 373  Q
     ||| | || || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  28625988 cgacgcaatctcatcggcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaag 28626056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 28636557 - 28636618
Alignment:
Q  108 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 169  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28636557 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28636618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 28653243 - 28653304
Alignment:
Q  108 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 169  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28653243 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28653304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 373
Target Start/End: Original strand, 28740338 - 28740600
Alignment:
Q  105 aagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcat 204  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||   ||| | ||| ||   ||   | ||||||||||    
T  28740338 aagggacctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaa---gcttttgttcat 28740434  T
Q  205 gaggaatgattgaacaattaagcactgagtgagaggcaagaagagcaagaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagacg 304  Q
       ||||||   |||| || | |||    || || |||||||||||||||||||||||||||||||||  ||| || |||||| ||      |||| |||    
T  28740435 cttgaatgagcaaacactttaacacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaa---gaaatacg 28740531  T
Q  305 agacacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 373  Q
     ||| | || || | ||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  28740532 cgacgcaatctcatgggcagagagttgagcatctttaccagctttttgcaacacatcaaatacaccaag 28740600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 34229732 - 34229777
Alignment:
Q  3 attgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  34229732 attgtgattgaccaatgtcacctaactctatgtcacacaagtgcta 34229777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 28636761 - 28636840
Alignment:
Q  318 tcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaagatcaattgaacattggagtgccat 397  Q
    ||||| |||||||||||| |||| |||||||||||||| || |||||||||||||| ||| ||| | |||| ||||||||    
T  28636761 tcggcagagagttgagcatcttttccagctttttgcaaaacatcaaaaacaccaagctcagttgcagattgtagtgccat 28636840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 34229666 - 34229631
Alignment:
Q  16 aatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  34229666 aatgtcacccaactctatgtcacacaagtgctatcc 34229631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 8243436 - 8243390
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||||    
T  8243436 cattgtgattgatcaatgtcactcaactctatgtcacccaagtgcta 8243390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 31159906 - 31159856
Alignment:
Q  3 attgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 53  Q
    ||||||||||| ||||||||||||| | |||||||| ||||||||||||||    
T  31159906 attgtgattgatcaatgtcacccaattttatgtcactcaagtgctatccga 31159856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1880327 - 1880373
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||    
T  1880327 acattgtgattgaccaatgtca-ccaattctatgtcacccaagtgcta 1880373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 5033271 - 5033306
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  5033271 accaatgtcacccaactctatgtcacccaagtgcta 5033306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6296654 - 6296607
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    ||||||||||||  |||||||||||||||||||||||  |||||||||    
T  6296654 acattgtgattggtcaatgtcacccaactctatgtcatccaagtgcta 6296607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 33841619 - 33841584
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  33841619 accaatgtcacccaactctatgtcacccaagtgcta 33841584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 34541846 - 34541799
Alignment:
Q  7 tgattgaccaatgtcacccaactctatgtcacacaagtgctatccgag 54  Q
    |||||| |||||||||||||||| |||||||| ||||||||| |||||    
T  34541846 tgattggccaatgtcacccaactttatgtcacccaagtgctacccgag 34541799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 36766210 - 36766176
Alignment:
Q  4 ttgtgattgaccaatgtcacccaactctatgtcac 38  Q
    ||||||| |||||||||||||||||||||||||||    
T  36766210 ttgtgatcgaccaatgtcacccaactctatgtcac 36766176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 5667125 - 5667080
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgctatccgagtaat 58  Q
    |||||||||| ||||||||||||||| ||||||||| |||| ||||    
T  5667125 accaatgtcatccaactctatgtcacccaagtgctacccgaataat 5667080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 34229632 - 34229603
Alignment:
Q  24 ccaactctatgtcacacaagtgctatccga 53  Q
    ||||||||||||||||||||||||||||||    
T  34229632 ccaactctatgtcacacaagtgctatccga 34229603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 2581895 - 2581927
Alignment:
Q  23 cccaactctatgtcacacaagtgctatccgagt 55  Q
    |||||||||||||||| ||||||||||||||||    
T  2581895 cccaactctatgtcacccaagtgctatccgagt 2581927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 43844579 - 43844619
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgctatccga 53  Q
    |||||||||| ||||||||||||||| ||| ||||||||||    
T  43844579 accaatgtcatccaactctatgtcacccaattgctatccga 43844619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 373
Target Start/End: Complemental strand, 5358 - 5228
Alignment:
Q  240 gcaagaagagcaagaatgcgatccaacattttgaaagcttctggattgttgatgttggaaagacgagacacgatgtcgtcggccgagagttgagcacctt 339  Q
    |||||||||||||||||||||||||||||||||  ||| || |||||| ||      |||| ||| ||| | || || ||||| ||||||||||||||||    
T  5358 gcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaa---gaaatacgcgacgcaatctcatcggcagagagttgagcacctt 5262  T
Q  340 taccagctttttgcaacacttcaaaaacaccaag 373  Q
    ||||||||||||||||||| ||||| ||||||||    
T  5261 taccagctttttgcaacacatcaaatacaccaag 5228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 5487 - 5426
Alignment:
Q  108 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 169  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  5487 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 5426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4609085 - 4609136
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 52  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4609085 acattgtgattgaccaatgtcacccaactctatgtcacacaagtactatccg 4609136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 9157401 - 9157449
Alignment:
Q  3 attgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  9157401 attgtgattgatcaatgtcaaccaactctatgtcacacaagtgctatcc 9157449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1819538 - 1819487
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 52  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  1819538 acattgtgattgatcaatgtcacccaactctatgtcattcaagtgctatccg 1819487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 48823934 - 48823887
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  48823934 acattgtgattggccaatgtcacccaactctatgtcacccaagtgcta 48823887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 5694937 - 5694887
Alignment:
Q  3 attgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 53  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  5694937 attgtgattgaccaatgtcaccaaactctatgtcactcaagtgttatccga 5694887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 15220855 - 15220810
Alignment:
Q  6 gtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  15220855 gtgattgaccaatgtcacccaactccatgtcacccaagtgctatcc 15220810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46333995 - 46333942
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccgag 54  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||    
T  46333995 acattgtgattggccaatgtcatccaactctatgtcacccaagtgctacccgag 46333942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 47303484 - 47303525
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaa 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  47303484 acattgtgattgaccaatgtcacctaactctatgtcacacaa 47303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28928828 - 28928781
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  28928828 acattgtgattggccaatgtcaccaaactctatgtcacccaagtgcta 28928781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29371417 - 29371367
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    |||||||||||| ||||||||||| ||||||||||||| ||| ||||||||    
T  29371417 acattgtgattggccaatgtcacctaactctatgtcacccaaatgctatcc 29371367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 49445001 - 49445043
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  49445001 cattgtgattggccaatgtcacccaactctatgtcacccaagt 49445043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 9157338 - 9157306
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtg 45  Q
    |||||||||||||||||||||||||||||||||    
T  9157338 accaatgtcacccaactctatgtcacacaagtg 9157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 34062257 - 34062221
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    ||||||||||| |||||||||||||||||||||||||    
T  34062257 cattgtgattggccaatgtcacccaactctatgtcac 34062221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 28928864 - 28928911
Alignment:
Q  5 tgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 52  Q
    |||||||| ||||||||||| |||||||| |||| |||||||||||||    
T  28928864 tgtgattggccaatgtcaccaaactctatatcactcaagtgctatccg 28928911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 32157618 - 32157665
Alignment:
Q  5 tgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 52  Q
    |||||||||||||||||||| ||||||||||||  ||||| |||||||    
T  32157618 tgtgattgaccaatgtcaccaaactctatgtcatccaagtactatccg 32157665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 36290463 - 36290428
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtca 37  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36290463 cattgtgattggccaatgtcacccaactctatgtca 36290428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 36290517 - 36290556
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgctatccg 52  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  36290517 accaatgtcacccaactctatgtcacccaagtactatccg 36290556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 48993945 - 48993910
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  48993945 accaatgtcacccaactctatgtcacccaagtgcta 48993910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 49444941 - 49444906
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  49444941 accaatgtcacccaactctatgtcacccaagtgcta 49444906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 8337941 - 8337983
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  8337941 cattgtgattggtcaatgtcacccaactctatgtcacccaagt 8337983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 29371478 - 29371516
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  29371478 accaatgtcacctagctctatgtcacacaagtgctatcc 29371516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19711229 - 19711192
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  19711229 acattgtgattggtcaatgtcacccaactctatgtcac 19711192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37155135 - 37155180
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactcta-tgtcacacaagtg 45  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||    
T  37155135 acattgtgattggccaatgtcacccaactctattgtcacccaagtg 37155180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7788329 - 7788373
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtg 45  Q
    |||||||||||||  |||||||||||| |||||||||| ||||||    
T  7788329 acattgtgattgagtaatgtcacccaattctatgtcacccaagtg 7788373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 48604996 - 48604964
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  48604996 acattgtgattgaccaatgtcacctaactctat 48604964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47677344 - 47677394
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47677344 acattgtgattgatcaatgtcacccaactctatgtcacacaagtgctatcc 47677394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43139758 - 43139711
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  43139758 acattgtgattgaccgatgtcacccaactctatgtcactcaagtgcta 43139711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 49418740 - 49418693
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||    
T  49418740 acattgtgattgaccaatatcacccaactctatgtcacccaagtgcta 49418693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29031803 - 29031853
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  29031803 acattgtaattgaccaatatcacctaactctatgtcacacaagtgctatcc 29031853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33689265 - 33689312
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  33689265 acattgtgattggccaatgtcacccaactcaatgtcacccaagtgcta 33689312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 49414512 - 49414559
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  49414512 acattgtaattggccaatgtcacccaactctatgtcacccaagtgcta 49414559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 1801585 - 1801627
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  1801585 cattgtgattggccaatgtcacccaactctatgtcacccaagt 1801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18321740 - 18321790
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    |||||||||||||||||||||| ||||||||||||||  |||||| |||||    
T  18321740 acattgtgattgaccaatgtcatccaactctatgtcatccaagtgttatcc 18321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30476523 - 30476473
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    |||||||||||| ||||||||||| | |||| |||||||||||||||||||    
T  30476523 acattgtgattggccaatgtcacctagctctctgtcacacaagtgctatcc 30476473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 55223260 - 55223222
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  55223260 accaatgtcacctaactctatgtcacacaagtgctatcc 55223222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 33689202 - 33689166
Alignment:
Q  15 caatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||||||||||||||||||||| |||||    
T  33689202 caatgtcacccaactctatgtcacacaagtgttatcc 33689166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39385777 - 39385813
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtca 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  39385777 acattgtgattggccaatgtcacccaactctatgtca 39385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 1272559 - 1272594
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  1272559 accaatgtcacccaactctatgtcacccaagtgcta 1272594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29031763 - 29031712
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 52  Q
    |||||||||||||||||| ||||| ||||||||||||  |||||| ||||||    
T  29031763 acattgtgattgaccaatatcacctaactctatgtcatgcaagtgttatccg 29031712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 45103137 - 45103102
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  45103137 accaatgtcacccaactctatgtcacccaagtgcta 45103102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 55223321 - 55223372
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 52  Q
    ||||| |||||||||||| ||||  ||||||||||||| |||||||||||||    
T  55223321 acattatgattgaccaatatcacttaactctatgtcacccaagtgctatccg 55223372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 30734428 - 30734390
Alignment:
Q  15 caatgtcacccaactctatgtcacacaagtgctatccga 53  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  30734428 caatgtcaccaaactctatgtcacacaagttctatccga 30734390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47677304 - 47677254
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    |||||||||| |  |||||||||| |||||||||||||||||||| |||||    
T  47677304 acattgtgatcggtcaatgtcaccaaactctatgtcacacaagtgttatcc 47677254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 1272536 - 1272492
Alignment:
Q  7 tgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    |||||| ||||||||||| |||||||||||||  |||||||||||    
T  1272536 tgattggccaatgtcaccaaactctatgtcacctaagtgctatcc 1272492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 1801474 - 1801442
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtg 45  Q
    |||||||||||||||||||||||||| ||||||    
T  1801474 accaatgtcacccaactctatgtcacccaagtg 1801442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14464604 - 14464554
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14464604 acattgtgattgaccaatgtcactcaactctatgtcacacaagtgctatcc 14464554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2828633 - 2828586
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  2828633 acattgtgattggccaatgtcacccaactctatgtcacagaagtgcta 2828586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 14470620 - 14470582
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14470620 accaatgtcacccaactctatgtcacacaagtgctatcc 14470582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 2894010 - 2893968
Alignment:
Q  3 attgtgattgaccaatgtcacccaactctatgtcacacaagtg 45  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  2894010 attgtgattggccaatgtcacccaactctatgtcacccaagtg 2893968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 6217314 - 6217356
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  6217314 cattgtgattggccaatgtcacccaactctatgtcacccaagt 6217356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 45213912 - 45213948
Alignment:
Q  15 caatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||||||||||||||||||||| |||||    
T  45213912 caatgtcacccaactctatgtcacacaagtgttatcc 45213948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14229442 - 14229488
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  14229442 acattgtgattg-ccaatgtcatccaactctatgtcacccaagtgcta 14229488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15011369 - 15011412
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    |||||||||||| |||||||||| |||||||||||||| |||||    
T  15011369 acattgtgattggccaatgtcactcaactctatgtcacccaagt 15011412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 38933697 - 38933732
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  38933697 accaatgtcacccaactctatgtcacccaagtgcta 38933732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 29925660 - 29925702
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||| |||||||||||||||||||||| || |||||    
T  29925660 cattgtgattggccaatgtcacccaactctatgttacccaagt 29925702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2143961 - 2144002
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaa 42  Q
    |||||||||||| |||| ||||| ||||||||||||||||||    
T  2143961 acattgtgattggccaacgtcactcaactctatgtcacacaa 2144002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 2894056 - 2894089
Alignment:
Q  5 tgtgattgaccaatgtcacccaactctatgtcac 38  Q
    |||||||||||||||||| |||||||||||||||    
T  2894056 tgtgattgaccaatgtcatccaactctatgtcac 2894089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 38933635 - 38933599
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    |||||||||||  ||||||||||||||||||||||||    
T  38933635 cattgtgattggtcaatgtcacccaactctatgtcac 38933599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30165336 - 30165388
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 53  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  30165336 acattgtgattgaccaatgtcacccaactctatatcacacaagtcctatccga 30165388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 4649368 - 4649332
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  4649368 cattgtgattgaccaatgtcacccaactctatgtcac 4649332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 49110057 - 49110097
Alignment:
Q  231 gagtgagaggcaagaagagcaagaatgcgatccaacatttt 271  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  49110057 gagtgagaggcaagaagagcaagaatgcgatctaacatttt 49110097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4649411 - 4649462
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 52  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||| ||||    
T  4649411 acattgtgattgaccaatgtcaccaaactctatgtcactcaattgctgtccg 4649462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27028842 - 27028795
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  27028842 acattgtgattgtccaatgttacccaactctatgtcacccaagtgcta 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41018277 - 41018230
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||    
T  41018277 acattgtgattggccaatgtcacccaactctatgtcatccaagtgcta 41018230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 29053404 - 29053446
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  29053404 cattgtgattggccaatgtcacccaactctatgtcacccaagt 29053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 49109931 - 49109992
Alignment:
Q  102 atcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcat 163  Q
    |||||||| || |||||||||||||| |||||||||||||| || || ||||||| ||||||    
T  49109931 atcaagggacccaatgaaacaccatcggaattaggagcaaagaatttggcaacagaagtcat 49109992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 11016979 - 11017014
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  11016979 accaatgtcacccaactctatgtcacccaagtgcta 11017014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 34854743 - 34854700
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagtg 45  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||    
T  34854743 cattgtgattggccaatgtcaccaaactctatgtcacccaagtg 34854700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 42628405 - 42628440
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  42628405 accaatgtcacccaactctatgtcacccaagtgcta 42628440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 45231902 - 45231859
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagtg 45  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  45231902 cattgtgattggtcaatgtcacccaactctatgtcacccaagtg 45231859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25001396 - 25001347
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatc 50  Q
    |||||||||||| ||||||||||| |||||||| |||| ||| |||||||    
T  25001396 acattgtgattgtccaatgtcaccaaactctatttcacccaaatgctatc 25001347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 29053362 - 29053326
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  29053362 cattgtgattggccaatgtcaccaaactctatgtcac 29053326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 42628343 - 42628307
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    |||||||||||  ||||||||||||||||||||||||    
T  42628343 cattgtgattggtcaatgtcacccaactctatgtcac 42628307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28818966 - 28818919
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  28818966 acattgtgattgaccaatgtcacccaactctatgtcacccaagtgcta 28818919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3180109 - 3180062
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  3180109 acattatgattgatcaatgtcacccaactctatgtcacacaagtgcta 3180062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26662448 - 26662401
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  26662448 acattgtgattggtcaatgtcacccaactctatgtcacacaagtgcta 26662401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26934043 - 26933996
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  26934043 acattgtgattggtcaatgtcacccaactctatgtcacacaagtgcta 26933996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 2953246 - 2953204
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  2953246 cattgtgattgaccaatgtcacccaactctatgtcacccaagt 2953204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 16439227 - 16439277
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  16439227 acattgtgattgatcaatgtcacccaactctatgtcacacaaatgttatcc 16439277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 3899887 - 3899845
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  3899887 cattgtgattggccaatgtcacccaactctatgtcacccaagt 3899845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 16971254 - 16971295
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgctatccgag 54  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  16971254 accaatgtcacccaactctatgtcacccaagtgctacccgag 16971295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6912346 - 6912294
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 53  Q
    |||||||||||||| ||||||| | |||||||||||| |||||||||| ||||    
T  6912346 acattgtgattgactaatgtcaactaactctatgtcatacaagtgctacccga 6912294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 2356381 - 2356416
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||| |||||||||||||||||||||||||    
T  2356381 accaatgtcatccaactctatgtcacacaagtgcta 2356416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 2953300 - 2953335
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  2953300 accaatgtcacccaactctatgtcacccaagtgcta 2953335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 16971192 - 16971150
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||| |||||||||||||| |||||||||| |||||    
T  16971192 cattgtgattggccaatgtcacccaagtctatgtcacccaagt 16971150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 32485659 - 32485697
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  32485659 accaatgtcacccaactctgtgtcacacaagtgttatcc 32485697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 12913913 - 12913942
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaa 42  Q
    ||||||||||||||||||||||||||||||    
T  12913913 accaatgtcacccaactctatgtcacacaa 12913942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 47404634 - 47404587
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  47404634 acattgtgattgaccaatgtcacccaactctatgtcacccaagtgcta 47404587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24006151 - 24006203
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 53  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  24006151 acattgtgattggtcaatgtcacccaactctatgtcacccaagtgctatccga 24006203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50384154 - 50384107
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  50384154 acattgtgattggccaatgtcacccaactctatgtcacccaagtgcta 50384107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 42375058 - 42375016
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  42375058 cattgtgattgaccaatgtcacccaactctatgtcacccaagt 42375016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 47404675 - 47404717
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  47404675 cattgtgattgaccaatgtcacccaactctatgtcacccaagt 47404717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 55090045 - 55089995
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  55090045 acattgtgattgaccaatgtcactcaactctatgtcacccaagtgatatcc 55089995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 55090085 - 55090135
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  55090085 acattgtgattgaccaatgtcactcaactctatgtcacccaagtgatatcc 55090135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31430510 - 31430457
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccgag 54  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||| |||||    
T  31430510 acattgtgattggtcaatgtcacccaactctatgtcacccaagtgctacccgag 31430457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 24006118 - 24006072
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||||    
T  24006118 cattgtgattggccaatgtcacccaactgtatgtcacccaagtgcta 24006072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 19184551 - 19184596
Alignment:
Q  4 ttgtgattgaccaatgtcacccaactctatgtcacacaagtgctat 49  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||    
T  19184551 ttgtgattgaccaatgtcacccaactttacgtcacccaagtgctat 19184596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 55089926 - 55089889
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  55089926 acattgtgattgaccaatgtcactcaactctatgtcac 55089889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 25618007 - 25617971
Alignment:
Q  15 caatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||||||||||||||||||||||| |||||    
T  25618007 caatgtcacccaactctatgtcacacaagtgttatcc 25617971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40789268 - 40789315
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||| ||||| ||||| ||||||||||||| |||||||||    
T  40789268 acattgtgattggccaatatcaccaaactctatgtcacccaagtgcta 40789315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 42375120 - 42375155
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||||| |||||||||    
T  42375120 accaatgtcacccaactctatgtcacccaagtgcta 42375155  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 53954720 - 53954755
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgcta 48  Q
    ||||||||||||||||||||||||||| ||||||||    
T  53954720 accaatgtcacccaactctatgtcacaaaagtgcta 53954755  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 54716396 - 54716361
Alignment:
Q  3 attgtgattgaccaatgtcacccaactctatgtcac 38  Q
    ||||||||||| ||||||||||||||||||||||||    
T  54716396 attgtgattgatcaatgtcacccaactctatgtcac 54716361  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 31430548 - 31430590
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    |||||| |||| ||||||||||||||||||||||||| |||||    
T  31430548 cattgtaattggccaatgtcacccaactctatgtcacccaagt 31430590  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40789228 - 40789179
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatc 50  Q
    |||||||||||| ||||||||||| ||||||||||||  |||||| ||||    
T  40789228 acattgtgattggccaatgtcaccaaactctatgtcattcaagtgttatc 40789179  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45591459 - 45591410
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatc 50  Q
    ||||| |||||||| |||| ||||||||||||| ||||||||||| ||||    
T  45591459 acattatgattgacgaatgccacccaactctatatcacacaagtgttatc 45591410  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 45591491 - 45591520
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactc 30  Q
    ||||||||||||||||||||||||||||||    
T  45591491 acattgtgattgaccaatgtcacccaactc 45591520  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 28693970 - 28693922
Alignment:
Q  3 attgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 51  Q
    ||||||||||  |||||||| |||||| |||||||| ||||||||||||    
T  28693970 attgtgattggtcaatgtcatccaactttatgtcacccaagtgctatcc 28693922  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52028598 - 52028554
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtg 45  Q
    |||| ||||||| ||||| ||||||||||||||||||| ||||||    
T  52028598 acatcgtgattggccaatatcacccaactctatgtcacccaagtg 52028554  T

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Target: scaffold1033 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2302 - 2350
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctat 49  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  2302 acattgtgattgatcaatgtcgcccaattctatgtcacacaagtgctat 2350  T

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Target: scaffold1029 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2302 - 2350
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctat 49  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  2302 acattgtgattgatcaatgtcgcccaattctatgtcacacaagtgctat 2350  T

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Target: scaffold0047 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 63805 - 63763
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 44  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  63805 cattgtgattggccaatgtcacccaactctatgtcacccaagt 63763  T

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Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 63846 - 63883
Alignment:
Q  1 acattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  63846 acattgtgattggccaatgtcacccaactctatatcac 63883  T

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Target: scaffold0180 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 19148 - 19113
Alignment:
Q  15 caatgtcacccaactctatgtcacacaagtgctatc 50  Q
    |||||||||||||||||||||||||||| |||||||    
T  19148 caatgtcacccaactctatgtcacacaaatgctatc 19113  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 49729 - 49696
Alignment:
Q  15 caatgtcacccaactctatgtcacacaagtgcta 48  Q
    |||||||||||||||||||||||| |||||||||    
T  49729 caatgtcacccaactctatgtcacccaagtgcta 49696  T

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Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 49793 - 49829
Alignment:
Q  2 cattgtgattgaccaatgtcacccaactctatgtcac 38  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  49793 cattgtgattggccaatgtcacctaactctatgtcac 49829  T

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Target: scaffold0586 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 7157 - 7196
Alignment:
Q  13 accaatgtcacccaactctatgtcacacaagtgctatccga 53  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  7157 accaatgtcacc-aactctatgtcacacaagtgttatccga 7196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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