View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_high_22 (Length: 409)

Name: NF4285_high_22
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_high_22
NF4285_high_22
[»] chr6 (3 HSPs)
chr6 (12-395)||(1936608-1936996)
chr6 (266-359)||(1922904-1922997)
chr6 (295-362)||(1952146-1952213)
[»] chr4 (5 HSPs)
chr4 (74-201)||(26903614-26903746)
chr4 (73-187)||(26905519-26905638)
chr4 (136-198)||(24519958-24520025)
chr4 (73-162)||(24520635-24520724)
chr4 (73-200)||(4223877-4224008)
[»] chr3 (1 HSPs)
chr3 (61-198)||(34998470-34998613)
[»] chr5 (1 HSPs)
chr5 (101-199)||(15955052-15955155)
[»] chr8 (1 HSPs)
chr8 (108-164)||(25480022-25480078)


Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Complemental strand, 1936996 - 1936608
Alignment:
Q  12 atgagatgaaacattttgatactttagtaaatagactttaaatataacttaattctctctattcttcttcttcctgattcaaaccctataaactaggtta 111  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1936996 atgaaatgaaacattttaatactttagtaaatagactttaaatataacttaattctctctattcttcttcttcctgattcaaaccctataaactaggtta 1936897  T
Q  112 taactatttttcagttttaacagcttatccaccttgttttatagacttatcca-----ttctataaagaaaaacaccattgatgcgataacaatttgatc 206  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  1936896 taactattttccagttttaacagcttatccaccttgttttatagacttatccacctggttctataaagaaaaacaccattgatgcgataacaatttgatc 1936797  T
Q  207 catattcccaattatcaaggattaaattatgaaaaataacaaaaacaatatatatgatatgatgaagaaaagtatttatacaaggaagagaaaagcatct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1936796 catattcccaattatcaaggattaaattatgaaaaataacaaaaacaatatatatgatatgatgaagaaaagtatttatacaaggaagagaaaagcatct 1936697  T
Q  307 atgatggacatttttgccactgctgcatggaaatctttatggatggcatggtgtatgatatttgaaatgatggttttaatgggattcgt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1936696 atgatggacatttttgccactgctgcatggaaatctttatggatggcatggtgtatgatatttgaaatgatggttttaatgggattcgt 1936608  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 359
Target Start/End: Complemental strand, 1922997 - 1922904
Alignment:
Q  266 tgatgaagaaaagtatttatacaaggaagagaaaagcatctatgatggacatttttgccactgctgcatggaaatctttatggatggcatggtg 359  Q
    ||||||||||  |||||| ||||  ||||||||||||||| | |||||||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  1922997 tgatgaagaagggtatttgtacatagaagagaaaagcatcaaagatggacattttggtcactgcttcatggaaatctttatggatggaatggtg 1922904  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 1952213 - 1952146
Alignment:
Q  295 agaaaagcatctatgatggacatttttgccactgctgcatggaaatctttatggatggcatggtgtat 362  Q
    ||||||||||||||||||| ||||||   |||| || |||||||||||||||||| || ||| |||||    
T  1952213 agaaaagcatctatgatggtcattttcttcactacttcatggaaatctttatggaaggaatgttgtat 1952146  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 26903614 - 26903746
Alignment:
Q  74 tcttcttcttcctgattcaaaccctataaactaggttataactatttttcagttttaacagcttatccaccttgttttatagacttatcca-----ttct 168  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||     ||||    
T  26903614 tcttcttcttcctgattcaaaccctagaaaccaggttataactgtttttcagttttaacagcttatccatcttgttctataggcttatccacctagttct 26903713  T
Q  169 ataaagaaaaacaccattgatgcgataacaatt 201  Q
    ||||||||||||||||||| | || ||||||||    
T  26903714 ataaagaaaaacaccattgctacgttaacaatt 26903746  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 26905519 - 26905638
Alignment:
Q  73 ttcttcttcttcctgattcaaaccctataaactaggttataactatttttcagttttaacagcttatccaccttgttttatagacttatcca-----ttc 167  Q
    ||||||||||||||||| || || ||| |||||||||||||||| |||| |||||||||||| |||||||||||||| ||||| ||||||||     |||    
T  26905519 ttcttcttcttcctgatccatactctagaaactaggttataactgttttccagttttaacagtttatccaccttgttctataggcttatccacctggttc 26905618  T
Q  168 tataaagaaaaacaccattg 187  Q
    |||| |||||||||||||||    
T  26905619 tatagagaaaaacaccattg 26905638  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 24520025 - 24519958
Alignment:
Q  136 ttatccaccttgttttatagacttatccat-----tctataaagaaaaacaccattgatgcgataaca 198  Q
    |||||||||||||| ||||| |||||||||     |||||| |||||||||||||||||||| |||||    
T  24520025 ttatccaccttgttctataggcttatccatctgtatctatatagaaaaacaccattgatgcgctaaca 24519958  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 24520724 - 24520635
Alignment:
Q  73 ttcttcttcttcctgattcaaaccctataaactaggttataactatttttcagttttaacagcttatccaccttgttttatagacttatc 162  Q
    ||||||||||||||||| ||||  ||| |||  ||||||||| | | ||  |||||| |||| ||||||||| |||| ||||||||||||    
T  24520724 ttcttcttcttcctgatccaaaatctagaaatcaggttataattgtcttagagttttgacagtttatccaccatgttctatagacttatc 24520635  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 4224008 - 4223877
Alignment:
Q  73 ttcttcttcttcctgattcaaaccctataaactaggttataactatttttcagttttaacagcttatccaccttgttttatagacttatcca-----ttc 167  Q
    ||||| ||||||||||| ||||  ||| |||  |||||||| || | || ||||||| |||| ||||| |||||||| ||| | ||||||||     |||    
T  4224008 ttctttttcttcctgatgcaaaatctagaaatcaggttatagctgtcttccagttttgacagtttatctaccttgttctattggcttatccacctagttc 4223909  T
Q  168 tataaagaaaaacaccattgatgcgataacaat 200  Q
    |||| || ||||||||||||||||| |||||||    
T  4223908 tatagag-aaaacaccattgatgcgctaacaat 4223877  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 34998613 - 34998470
Alignment:
Q  61 taattctctctat----tcttcttcttcctgattcaaaccctataaactaggttataactatttttcagttttaacagcttatccaccttgttttataga 156  Q
    |||||||||||||    |||||||||||||| | ||||||||| |||| ||||||||||| |||| |||||||||||| ||||||||||||  ||||||     
T  34998613 taattctctctattctatcttcttcttcctg-tccaaaccctagaaaccaggttataactgttttccagttttaacagtttatccaccttg--ttatagg 34998517  T
Q  157 cttatcca-----ttctataaagaaaaacaccattgatgcgataaca 198  Q
    ||||||||     ||||||||||||||||||||||| |||| |||||    
T  34998516 cttatccacctggttctataaagaaaaacaccattgctgcgctaaca 34998470  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 15955155 - 15955052
Alignment:
Q  101 aaactaggttataactatttttcagttttaacagcttatccaccttgttttatagacttatcc-----attctataaagaaaaacaccattgatgcgata 195  Q
    ||||||| |||| ||| ||||||||||||||||| ||||||| | |||| ||||| |||||||     |||||||| ||||||||||||||| |||| ||    
T  15955155 aaactagattattactgtttttcagttttaacagtttatccatcctgttctataggcttatccacctgattctatagagaaaaacaccattgttgcgcta 15955056  T
Q  196 acaa 199  Q
    ||||    
T  15955055 acaa 15955052  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 25480022 - 25480078
Alignment:
Q  108 gttataactatttttcagttttaacagcttatccaccttgttttatagacttatcca 164  Q
    ||||||||| |||| |||||||||||| |||||||||||||| ||||| ||||||||    
T  25480022 gttataactgttttccagttttaacagtttatccaccttgttctataggcttatcca 25480078  T

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