View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_27 (Length: 381)
Name: NF4285_high_27
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 112 - 366
Target Start/End: Complemental strand, 34330426 - 34330172
Alignment:
| Q |
112 |
agcagagtttcaccagtagtgatcaatgttaacaatgaaacagaaagcattgttataccagatacaacaagatactcatctgcttcatcaatggatggtt |
211 |
Q |
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| T |
34330426 |
agcagagtttcaccagtagtgatcaatgttaacaatgaaacagaaagcattgttataccagatacaacaagatactcatctgcttcatcaatggatggtt |
34330327 |
T |
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| Q |
212 |
atgcaaacatcagaaactatcgagctcgttctttccatgctgcaacaccaacagcttcatcagaagctagctggaacagtcaacaaggtttgttatcaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34330326 |
atgcaaacatcagaaactatcgagctcgttctttccatgctgcaacaccaacagcttcatcagaagctagctggaacagtcaacaaggtttgttatcaca |
34330227 |
T |
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| Q |
312 |
cccagcaggtgctatctcagttaacatcaaaaacccttcaaatccaaatcctaac |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34330226 |
cccagcaggtgctatctcagttaacatcaaaaacccttcaaatccaaatcctaac |
34330172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34330537 - 34330494
Alignment:
| Q |
1 |
tcagaactcagcatattcgacgcacacaaatacttcaacgaagg |
44 |
Q |
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| T |
34330537 |
tcagaactcagcatattcgacgcacacaaatacttcaacgaagg |
34330494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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