View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4285_high_28 (Length: 367)
Name: NF4285_high_28
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 42769501 - 42769846
Alignment:
| Q |
1 |
agaggaggaagagataaacatggaacatggtgatagatgtttgtagtaatggatgtttgttactagctagcttttgtaaaagatttgtgttttctaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42769501 |
agaggaggaagagataaacatggaacatggtgatagatgtttgtagtaatggatgtttgttactagctagcttttgtaaaagatttgtgttttctaatga |
42769600 |
T |
|
| Q |
101 |
tgtctttaggggtgaaaagtgtgaatgtgtcataattgattttgagggaagttagtttgtgcttaactttgaaggaaagccattaatagtctatctatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42769601 |
tgtctttaggggtgaaaagtgtgaatgtgtcataattgattttgagggaagttagtttgtgcttaactttgaaggaaagccattaatagtctatctatgc |
42769700 |
T |
|
| Q |
201 |
gtttggtggagatttatttnnnnnnnnnnnnnnnnnnnnngagtggactctataataagaattgatgtttttggcttattatgattggttagaatttata |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42769701 |
gtttggtggagatttatttaaaaaagaaaaaagaaaaaaagagtggactctataataagaattgatgtttttggcttattatgattggttagaatttata |
42769800 |
T |
|
| Q |
301 |
atctaacaatataagagtacaagacattatggtctcatataagata |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42769801 |
atctaacaatataagagtacaagacattatggtctcatataagata |
42769846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University