View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_31 (Length: 348)
Name: NF4285_high_31
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 53 - 332
Target Start/End: Complemental strand, 37359555 - 37359288
Alignment:
| Q |
53 |
atttaaaaatcatttcacacagttctacgccgaagcttatttaataagtcaaaataacatttgtagcaataaacataatgttgaaatatatatttagatg |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37359555 |
atttaaaaatcatttcacacagttctacgccgaagcttatttaataagtcaaaataacatttgtagcaataaacataatgttgaaatatatatttagata |
37359456 |
T |
|
| Q |
153 |
atttttggatttggctccaaggtccttggtgcaaaatgaattttatgttattgatttcaaaagttgattccaaggaccttggtcatattaaatataactt |
252 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37359455 |
atttttggatttggctccaaggtccttggtccaaaatgaattttatgttattgatttcaaaaattgattccaaggaccttggtcatattaaatataactt |
37359356 |
T |
|
| Q |
253 |
ctccaaacagacatttaactaccagacaatatatttatgatttaaagtgtgattattaaaaactttctttcaaaagtaac |
332 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37359355 |
ctccaaacagac------------gacaatatatttatgatttaaagtgtgattattaaaaactttctttcaaaagtaac |
37359288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 53 - 332
Target Start/End: Original strand, 37368509 - 37368776
Alignment:
| Q |
53 |
atttaaaaatcatttcacacagttctacgccgaagcttatttaataagtcaaaataacatttgtagcaataaacataatgttgaaatatatatttagatg |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37368509 |
atttaaaaatcatttcacacagttctacgccgaagcttatttaataagtcaaaataacatttgtagcaataaacataatgttgaaatatatatttagata |
37368608 |
T |
|
| Q |
153 |
atttttggatttggctccaaggtccttggtgcaaaatgaattttatgttattgatttcaaaagttgattccaaggaccttggtcatattaaatataactt |
252 |
Q |
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| T |
37368609 |
atttttggatttggctccaaggtccttggtccaaaatgaattttatgttattgatttcaaaaattgattccaaggaccttggtcatattaaatataactt |
37368708 |
T |
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| Q |
253 |
ctccaaacagacatttaactaccagacaatatatttatgatttaaagtgtgattattaaaaactttctttcaaaagtaac |
332 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37368709 |
ctccaaacatac------------gacaatatatttatgatttaaagtgtgattattaaaaactttctttcaaaagtaac |
37368776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 37390569 - 37390466
Alignment:
| Q |
97 |
taagtcaaaataacatttgtagcaataaacataatgttgaaatatatatttagatgatttttggatttggctccaaggtccttggtgcaaaatgaatttt |
196 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||| ||| || |||| ||| |||||||| |||||||| ||||||| ||||||||||||| |
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| T |
37390569 |
taagtcaatataacatttgtagcagtaaacataatgttgaaatttattttgagataattcctggatttgactccaaggaccttggtccaaaatgaatttt |
37390470 |
T |
|
| Q |
197 |
atgt |
200 |
Q |
| |
|
|||| |
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|
| T |
37390469 |
atgt |
37390466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 37381703 - 37381601
Alignment:
| Q |
97 |
taagtcaaaataacatttgtagcaataaacataatgttgaaatatatatttagatgatttttggatttggctccaaggtccttggtgcaaaatgaatttt |
196 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| || ||| |||| ||| |||||||| || ||||| ||||||| ||||||||||||| |
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| T |
37381703 |
taagtcaaaataacatttgtagcagtaaacataatgttgaaatctaaattgagataattcctggatttgacttcaaggaccttggtccaaaatgaatttt |
37381604 |
T |
|
| Q |
197 |
atg |
199 |
Q |
| |
|
||| |
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|
| T |
37381603 |
atg |
37381601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 35629473 - 35629524
Alignment:
| Q |
16 |
atgaaagacataa--tttattgctccaataacacctacaatttaaaaatcat |
65 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
35629473 |
atgaaagacataaaatttattgctccaataacatctacaatttaaaaatcat |
35629524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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