View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_38 (Length: 316)
Name: NF4285_high_38
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 29319260 - 29318974
Alignment:
| Q |
20 |
gaacagaggaatgagcaactatgtatttgttgtgtaccgccatgccgttgcattcattgttataaccccttttgcactctattttgataggtataatcct |
119 |
Q |
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| T |
29319260 |
gaacagaggaatgagcaactatgtatttgttgtgtaccgccatgccgttgcattcattgttataaccccttttgcactctattttgataggtataatcct |
29319161 |
T |
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| Q |
120 |
ctctccatctatatgtttgtgttttatttggtttggaattcactacttggttcttctttgcaaagtcttaaatttagggagagaaaaatctaaatttgtc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319160 |
ctctccatctatatgtttgtgttttatttggtttggaattcactacttggttcttctttgcaaagtcttaaatttagggagagaaaaatctaaatttgtc |
29319061 |
T |
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| Q |
220 |
aacaatgacccctacaacaaggaccaggtttccctagctgtattattttcctgcagtttcacgctataatagattgtggccgttcat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |
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| T |
29319060 |
aacaatgacccctacaacaaggaccaggtttccctagctgtattattttcctgcagtttcacgttgtaatagattatggccgttcat |
29318974 |
T |
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