View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_4 (Length: 586)
Name: NF4285_high_4
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 566
Target Start/End: Original strand, 5744142 - 5744687
Alignment:
| Q |
19 |
tatgcatgaacctcacatgatacaaactaaatttcatgtgccttatgttaccatcctttgaagatctcttctataagtagagcaagagagaaatagttta |
118 |
Q |
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| T |
5744142 |
tatgcatgaacctcacatgatacaaactaaatttcatgtgccttatgttaccatcctttgaagatctcttctataagtagagcaagagagaaatagttta |
5744241 |
T |
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| Q |
119 |
tatattgatacatactctcatctttccaatttttccttctagtgttttattatctattgaaaatgacaatgaaacaaatgatttttgttatgtttttctc |
218 |
Q |
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| T |
5744242 |
tatattgatacatactctcatctttccaatttttccttctagtgttttattatctattgaaaatgacaatgaaacaaatgatttttgttatgtttttctc |
5744341 |
T |
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| Q |
219 |
attcttttcccttaacctcgtctccccaatctttacccttccccttgcacccgcattatatgtttttggggactccctattagacaatggaaataataat |
318 |
Q |
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| T |
5744342 |
attcttttcccttaacctcctctccccaatctttacccttccccttgcacccgcattatatgtttttggggactccctattagacaatggcaataataat |
5744441 |
T |
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| Q |
319 |
tttcttccaactttagcgagagcaaatttcttaccttatggagttgatttccctagaggtccaacgggaagattttccaatggcagaaccgttgctgatt |
418 |
Q |
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| T |
5744442 |
tttcttccaactttagcgagagcaaatttcttaccttatggagttgatttccctagaggtccaacgggaagattttccaatggcagaaccgttgccgatt |
5744541 |
T |
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| Q |
419 |
ttttgggtacctaatttctgttattagctttagagtataaattaagtaatgtgataattttttatgagaaaatcaaccatagttaaggcttaaa-ttttt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | | | | ||||||||||| ||||| |
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| T |
5744542 |
ttttgggtacctaatttctgttattagctttagagtataaattaagtaatgtgataattttt--tgggtacctaa---tttcctaaggcttaaatttttt |
5744636 |
T |
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| Q |
518 |
tatttgtagtattctaaagtgaatt--tctcaatttgagaagcgaaatcaa |
566 |
Q |
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| T |
5744637 |
tatttgtagtattctaaagtgaatttatctcaatttgagaagcgaaatcaa |
5744687 |
T |
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