View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_high_40 (Length: 314)

Name: NF4285_high_40
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_high_40
NF4285_high_40
[»] chr2 (1 HSPs)
chr2 (13-307)||(7578152-7578441)
[»] chr3 (3 HSPs)
chr3 (65-227)||(10866787-10866941)
chr3 (95-221)||(53752474-53752595)
chr3 (95-140)||(41788559-41788604)
[»] chr5 (2 HSPs)
chr5 (69-220)||(21491275-21491418)
chr5 (68-220)||(34871730-34871874)
[»] chr7 (2 HSPs)
chr7 (65-221)||(21256861-21257009)
chr7 (145-227)||(45669530-45669612)
[»] chr6 (1 HSPs)
chr6 (65-137)||(29735062-29735134)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 7578441 - 7578152
Alignment:
Q  13 aacataaaaagccaaagcacaaatgcaaagaaagtcacatatatattattattaaaaatatgtggggtcaattataggtccatataatataagttaagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7578441 aacataaaaagccaaagcacaaatgcaaagaaagtcacatatatattattattaaaaatatgtgaggtcaattataggtccatataatataagttaagaa 7578342  T
Q  113 cacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgttcttaatacatatgtggcatctatggaccccaccaaaatgcttcaagaa 212  Q
     | |||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  7578341 tataaatattgttctttgcattggagta--------aaaatagaagaatgttcttaatacatacgtggcatttatggaccccaccaaaatgcttcaagaa 7578250  T
Q  213 cacaaatattattctttctccgagaatcagagagtgaacacaaaaaagaagg---tcttggttcaaattagaccattcacatccggtgatctgtgctc 307  Q
    ||||||||||||||||||| |||||| | |||||| |||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||    
T  7578249 cacaaatattattctttcttcgagaacctgagagttaacacaaaaaagtaggtcttcttggttcaaattagaccattcacatccggtgatctgtgctc 7578152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 65 - 227
Target Start/End: Original strand, 10866787 - 10866941
Alignment:
Q  65 taaaaatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgtt 164  Q
    ||||||||||||||||||||| |||| || |||||| ||||||||||||||||||||||||||||||        |||| |||||||||  |||||||||    
T  10866787 taaaaatatgtggggtcaattgtaggaccctataatgtaagttaagaacacaaatattgttctttgc--------attgaagtaaaaatgaaagaatgtt 10866878  T
Q  165 cttaatacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaatattattct 227  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||| ||||    
T  10866879 cttaatacatatgtgacatctttagaccccaccaaaatgcttcaagaacataaatattgttct 10866941  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 53752595 - 53752474
Alignment:
Q  95 tataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgttcttaatacatatgtggcatc---tatggac 191  Q
    |||||| ||||||||||||| |||||||||||||||||||||        |||||||||  ||  ||||| ||||||||||||||||| |   | || ||    
T  53752595 tataatgtaagttaagaacataaatattgttctttgcattgg--------agtaaaaatgaaaagatgtttttaatacatatgtggcagcagttttgaac 53752504  T
Q  192 cccaccaaaatgcttcaagaacacaaatat 221  Q
    ||||||||||||||| ||||| ||||||||    
T  53752503 cccaccaaaatgcttgaagaatacaaatat 53752474  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 41788559 - 41788604
Alignment:
Q  95 tataatataagttaagaacacaaatattgttctttgcattggagta 140  Q
    |||||| ||||||||||||| |||||||||||||||||||| ||||    
T  41788559 tataatgtaagttaagaacataaatattgttctttgcattgaagta 41788604  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 21491275 - 21491418
Alignment:
Q  69 aatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgttctta 168  Q
    ||||||| | ||||||| |||| |  |||||| ||||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||    
T  21491275 aatatgtagagtcaattgtaggactctataatgtaagttaagaacacaaatattgttctttgcattg--------gagtaaaaattgaagaatgttctta 21491366  T
Q  169 atacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaata 220  Q
    ||||||| ||||||||| |||||||||||||||| ||| |||||||||||||    
T  21491367 atacatacgtggcatctttggaccccaccaaaatacttaaagaacacaaata 21491418  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 34871730 - 34871874
Alignment:
Q  68 aaatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgttctt 167  Q
    ||||| |||||||||||| |||| || |||||| ||||||||||||| ||||||||||||||||        |||||||||||||| |||||||||| ||    
T  34871730 aaatacgtggggtcaattgtaggaccctataatgtaagttaagaacataaatattgttctttgc--------attggagtaaaaatggaagaatgttgtt 34871821  T
Q  168 aatacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaata 220  Q
    |||| ||||||||||| | | |||||||||||||| |||||| |||| |||||    
T  34871822 aatatatatgtggcatttttagaccccaccaaaatacttcaaaaacataaata 34871874  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 21257009 - 21256861
Alignment:
Q  65 taaaaatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgtt 164  Q
    ||||||||||||||| |||||  ||| || |||||| ||||||||||||| |||||||||||||||        |||||||||||||||  ||  |||||    
T  21257009 taaaaatatgtggggccaattgaaggaccttataatgtaagttaagaacataaatattgttctttg--------tattggagtaaaaatgaaaagatgtt 21256918  T
Q  165 cttaatacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaatat 221  Q
    |||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||    
T  21256917 cttaatacatatgtggcagctttggacctcaccaaaatgcttcaagaacataaatat 21256861  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 45669530 - 45669612
Alignment:
Q  145 agtaaaaatagaagaatgttcttaatacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaatattattct 227  Q
    ||||||||| ||| ||||||||||||| ||||||||||||| ||||  |||||||||||||||||||||||||||||| ||||    
T  45669530 agtaaaaatggaaaaatgttcttaatatatatgtggcatctttggattccaccaaaatgcttcaagaacacaaatattgttct 45669612  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 29735062 - 29735134
Alignment:
Q  65 taaaaatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattgga 137  Q
    |||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  29735062 taaaaatatgtgaggtcaattgtaggaccatataatgtaagttaagaacacaaatattgtactttgcattgga 29735134  T

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