View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_high_44 (Length: 282)

Name: NF4285_high_44
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_high_44
NF4285_high_44
[»] chr3 (10 HSPs)
chr3 (142-242)||(53747111-53747211)
chr3 (241-282)||(27959167-27959208)
chr3 (236-280)||(28219545-28219589)
chr3 (241-282)||(42613157-42613198)
chr3 (244-280)||(3009169-3009205)
chr3 (246-282)||(49679232-49679268)
chr3 (239-282)||(53642067-53642110)
chr3 (246-280)||(20494572-20494606)
chr3 (244-282)||(31523628-31523666)
chr3 (241-282)||(53642207-53642248)
[»] chr6 (8 HSPs)
chr6 (241-282)||(2142250-2142291)
chr6 (240-282)||(7507883-7507925)
chr6 (241-282)||(7098152-7098193)
chr6 (241-282)||(7506791-7506832)
chr6 (241-282)||(24484956-24484997)
chr6 (183-228)||(26472710-26472755)
chr6 (241-282)||(32737705-32737746)
chr6 (250-282)||(7507758-7507790)
[»] chr7 (16 HSPs)
chr7 (240-282)||(47799856-47799898)
chr7 (239-282)||(30102571-30102614)
chr7 (247-282)||(30588612-30588647)
chr7 (240-282)||(32520407-32520449)
chr7 (241-282)||(4269116-4269157)
chr7 (241-282)||(14696714-14696755)
chr7 (241-282)||(32520286-32520327)
chr7 (241-282)||(47080506-47080547)
chr7 (173-228)||(5793792-5793847)
chr7 (246-277)||(8256409-8256440)
chr7 (247-282)||(14696855-14696890)
chr7 (240-282)||(30102429-30102471)
chr7 (243-280)||(8607960-8607997)
chr7 (241-282)||(19027781-19027822)
chr7 (241-282)||(20726814-20726855)
chr7 (241-282)||(28528628-28528669)
[»] chr4 (24 HSPs)
chr4 (240-282)||(1015810-1015852)
chr4 (241-282)||(5524524-5524565)
chr4 (241-282)||(47834641-47834682)
chr4 (241-280)||(28405404-28405443)
chr4 (240-282)||(32146580-32146622)
chr4 (240-282)||(37002207-37002249)
chr4 (241-282)||(17492939-17492980)
chr4 (241-282)||(36688145-36688186)
chr4 (241-282)||(42010194-42010235)
chr4 (241-282)||(46238903-46238944)
chr4 (241-282)||(46239044-46239085)
chr4 (241-282)||(53526025-53526066)
chr4 (241-282)||(56269033-56269074)
chr4 (173-233)||(52661005-52661065)
chr4 (249-280)||(5524382-5524413)
chr4 (236-282)||(5361503-5361549)
chr4 (240-282)||(53526166-53526208)
chr4 (240-282)||(55160468-55160510)
chr4 (235-280)||(28701943-28701988)
chr4 (249-282)||(32146447-32146480)
chr4 (246-282)||(25218939-25218975)
chr4 (249-281)||(25219075-25219107)
chr4 (173-233)||(30508764-30508824)
chr4 (159-203)||(37142969-37143013)
[»] chr2 (12 HSPs)
chr2 (240-282)||(375070-375112)
chr2 (241-282)||(23459803-23459844)
chr2 (241-282)||(29188731-29188772)
chr2 (241-282)||(42380271-42380312)
chr2 (241-281)||(3354737-3354777)
chr2 (246-282)||(40254111-40254147)
chr2 (186-233)||(8063001-8063048)
chr2 (239-282)||(41435301-41435344)
chr2 (241-275)||(36402385-36402419)
chr2 (241-282)||(3594794-3594835)
chr2 (241-282)||(3594935-3594976)
chr2 (241-282)||(13780576-13780617)
[»] chr8 (11 HSPs)
chr8 (241-282)||(24241741-24241782)
chr8 (241-281)||(17867758-17867798)
chr8 (173-232)||(29819756-29819815)
chr8 (236-282)||(1937106-1937152)
chr8 (241-282)||(30905039-30905080)
chr8 (246-282)||(17867621-17867657)
chr8 (249-280)||(34612498-34612529)
chr8 (240-282)||(26749504-26749546)
chr8 (241-278)||(15010501-15010538)
chr8 (249-277)||(34612646-34612674)
chr8 (180-232)||(35205488-35205540)
[»] chr1 (7 HSPs)
chr1 (241-282)||(52279996-52280037)
chr1 (240-282)||(6948786-6948828)
chr1 (246-280)||(18107421-18107455)
chr1 (241-282)||(13615298-13615339)
chr1 (241-282)||(18107278-18107319)
chr1 (241-282)||(30077601-30077642)
chr1 (246-282)||(36004905-36004941)
[»] scaffold0664 (2 HSPs)
scaffold0664 (241-282)||(4657-4698)
scaffold0664 (246-281)||(4799-4834)
[»] chr5 (10 HSPs)
chr5 (240-281)||(2984346-2984387)
chr5 (241-282)||(3041264-3041305)
chr5 (241-282)||(36290679-36290720)
chr5 (241-280)||(11960546-11960585)
chr5 (241-282)||(2883784-2883825)
chr5 (187-228)||(36880066-36880107)
chr5 (241-282)||(40162666-40162707)
chr5 (246-282)||(8675098-8675134)
chr5 (248-280)||(19179395-19179427)
chr5 (240-280)||(36290528-36290568)
[»] scaffold0712 (1 HSPs)
scaffold0712 (241-281)||(3030-3070)
[»] scaffold0709 (1 HSPs)
scaffold0709 (241-281)||(3050-3090)
[»] scaffold0238 (1 HSPs)
scaffold0238 (241-282)||(25709-25750)
[»] scaffold0171 (1 HSPs)
scaffold0171 (241-282)||(17261-17302)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 53747211 - 53747111
Alignment:
Q  142 ggttatacggatgcaattgattttaatgggatgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaattaccacctaaattg 241  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  53747211 ggttatacggatgcaattgaatttaatgggatagattaacagttcaaaacaattttacacattcaaacaatcaaaacattttaaattatcacctaaattg 53747112  T
Q  242 g 242  Q
    |    
T  53747111 g 53747111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 27959208 - 27959167
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  27959208 gggtcaagatcctctccatttataaatttttccatttgttgc 27959167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 28219589 - 28219545
Alignment:
Q  236 aaattgggttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||| |||| |||||||||||||||||||||||||||||||||||    
T  28219589 aaatggggtcaagatcctctccatttataaatttttccatttgtt 28219545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 42613198 - 42613157
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  42613198 gggtcaagatcctctccatttataaattttttcatttgttgc 42613157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 3009169 - 3009205
Alignment:
Q  244 ttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3009169 ttaagatcctctccatttataaatttctccatttgtt 3009205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 49679232 - 49679268
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||| ||||||||||    
T  49679232 aagatcctctccatttataaattttttcatttgttgc 49679268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 53642067 - 53642110
Alignment:
Q  239 ttgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  53642067 ttgggttaagattctctccatttataattttttctatttgttgc 53642110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 20494606 - 20494572
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgtt 280  Q
    |||||||||||||||||||||||| ||||||||||    
T  20494606 aagatcctctccatttataaatttctccatttgtt 20494572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 31523628 - 31523666
Alignment:
Q  244 ttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  31523628 ttaagatcctctccatttataaatttctccatttattgc 31523666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 53642248 - 53642207
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||| ||||||||||||||  |||||||||||||||    
T  53642248 gggttaagattctctccatttataacgttttccatttgttgc 53642207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 2142250 - 2142291
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2142250 gggttaagatcctctccatttataaatttttccatttgttgc 2142291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 7507925 - 7507883
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  7507925 tgggttaagatcctctccatttataactttttccatttgttgc 7507883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 7098152 - 7098193
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  7098152 gggtaaagatcctctccatttataactttttccatttgttgc 7098193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 7506791 - 7506832
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||| |||||||| ||||||||||| ||||    
T  7506791 gggttaagatcctctctatttataactttttccatttattgc 7506832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 24484997 - 24484956
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||||||||||| ||||||||    
T  24484997 gggtcaagatcctcttcatttataaatttttccgtttgttgc 24484956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 26472755 - 26472710
Alignment:
Q  183 gttcaaaacaattttacacatacaaacaataaaaacattttaaatt 228  Q
    ||||||||||||||||||| ||||| |||| |||||||||| ||||    
T  26472755 gttcaaaacaattttacacgtacaatcaatcaaaacattttgaatt 26472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 32737705 - 32737746
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| ||||||||||| |||||||| ||||||||||||||||    
T  32737705 gggtaaagatcctctcgatttataactttttccatttgttgc 32737746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 7507758 - 7507790
Alignment:
Q  250 tcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||| ||||||||||||||||    
T  7507758 tcctctccatttataactttttccatttgttgc 7507790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 47799856 - 47799898
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  47799856 tgggtcaagatcctctccatttataaatttttccatttgttgc 47799898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 30102614 - 30102571
Alignment:
Q  239 ttgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  30102614 ttgggtaaagatcctctccatttataactttttccatttgttgc 30102571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 30588647 - 30588612
Alignment:
Q  247 agatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||||||||||||||||    
T  30588647 agatcctctccatttataaatttttccatttgttgc 30588612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 32520449 - 32520407
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  32520449 tgggtcaagatcctctccatttataactttttccatttgttgc 32520407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 4269116 - 4269157
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  4269116 gggtcaagatcctctccatttataactttttccatttgttgc 4269157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 14696714 - 14696755
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  14696714 gggtaaagatcctctccatttataattttttccatttgttgc 14696755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 32520286 - 32520327
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  32520286 gggtaaagatcctctccatttataactttttccatttgttgc 32520327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 47080547 - 47080506
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  47080547 gggtcaagatcctctccatttataaattttttcatttgttgc 47080506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 5793792 - 5793847
Alignment:
Q  173 tgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaatt 228  Q
    |||||| |||||||||||||||||| |||| ||||  ||| |||||||||||||||    
T  5793792 tgggttgacggttcaaaacaattttgcacacacaacaaatcaaaacattttaaatt 5793847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 8256409 - 8256440
Alignment:
Q  246 aagatcctctccatttataaatttttccattt 277  Q
    ||||||||||||||||||||||||||||||||    
T  8256409 aagatcctctccatttataaatttttccattt 8256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 14696890 - 14696855
Alignment:
Q  247 agatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||| ||||||||||||||||    
T  14696890 agatcctctccatttataactttttccatttgttgc 14696855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 30102429 - 30102471
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| ||||||||||||||||||||  |||||||||||||||    
T  30102429 tgggtcaagatcctctccatttataaccttttccatttgttgc 30102471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 8607960 - 8607997
Alignment:
Q  243 gttaagatcctctccatttataaatttttccatttgtt 280  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  8607960 gttaagatcctctccatttataactttctccatttgtt 8607997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 19027822 - 19027781
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  19027822 gggtcaagatcctcttcatttataactttttccatttgttgc 19027781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 20726814 - 20726855
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  20726814 gggtcaagatcctcttcatttataactttttccatttgttgc 20726855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 28528669 - 28528628
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  28528669 gggtcaagatcctctccatttataaatttttttatttgttgc 28528628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 1015810 - 1015852
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  1015810 tgggttaagatcctctccatttataaattttttcatttgttgc 1015852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 5524565 - 5524524
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  5524565 gggtcaagatcctctccatttataaatttttccatttgttgc 5524524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 47834682 - 47834641
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  47834682 gggtcaagatcctctccatttataaatttttccatttgttgc 47834641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 28405443 - 28405404
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  28405443 gggtaaagatcctctccatttataaatttttccatttgtt 28405404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 32146622 - 32146580
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  32146622 tgggtaaagatcctctccatttataactttttccatttgttgc 32146580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 37002207 - 37002249
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  37002207 tgggttaagatcctctccatttataaatttctccatttattgc 37002249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 17492939 - 17492980
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  17492939 gggtaaagatcctctccatttataactttttccatttgttgc 17492980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 36688145 - 36688186
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  36688145 gggtcaagatcctctccatttataaatttctccatttgttgc 36688186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 42010235 - 42010194
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  42010235 gggtcaagatcctctccatttataaattttttcatttgttgc 42010194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 46238903 - 46238944
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  46238903 gggtcaagatcctctccatttataactttttccatttgttgc 46238944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 46239085 - 46239044
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  46239085 gggtaaagatcctctccatttataactttttccatttgttgc 46239044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 53526025 - 53526066
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  53526025 gggtcaagatcctctccatttataactttttccatttgttgc 53526066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 56269033 - 56269074
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  56269033 gggtcaagatcctctccatttataaattttttcatttgttgc 56269074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 52661005 - 52661065
Alignment:
Q  173 tgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaattaccac 233  Q
    |||||||||||| ||||||||||||||||| || | |||| |||| ||||| |||||||||    
T  52661005 tgggttaacggtccaaaacaattttacacacacgaccaatcaaaatattttgaattaccac 52661065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 280
Target Start/End: Original strand, 5524382 - 5524413
Alignment:
Q  249 atcctctccatttataaatttttccatttgtt 280  Q
    ||||||||||||||||||||||||||||||||    
T  5524382 atcctctccatttataaatttttccatttgtt 5524413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 5361549 - 5361503
Alignment:
Q  236 aaattgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||| || ||||||| ||||||||||||||||||||||||||    
T  5361549 aaatggggtcaaaatcctcttcatttataaatttttccatttgttgc 5361503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 53526208 - 53526166
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||| || |||||||||||||    
T  53526208 tgggtaaagatcctctccatttataacttcttccatttgttgc 53526166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 55160510 - 55160468
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| ||||||||||||||||||||  |||||||||||||||    
T  55160510 tgggtcaagatcctctccatttataatcttttccatttgttgc 55160468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 28701988 - 28701943
Alignment:
Q  235 taaattgggttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||| |||||||| || |||||||||||||||||| ||||||||||    
T  28701988 taaaatgggttaaaattctctccatttataaatttctccatttgtt 28701943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Original strand, 32146447 - 32146480
Alignment:
Q  249 atcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||| ||||||||||||||||    
T  32146447 atcctctccatttataactttttccatttgttgc 32146480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 25218939 - 25218975
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| |||||| |||||||||    
T  25218939 aagatcctctccatttataactttttctatttgttgc 25218975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 25219107 - 25219075
Alignment:
Q  249 atcctctccatttataaatttttccatttgttg 281  Q
    ||||||||||||||||| |||||||||||||||    
T  25219107 atcctctccatttataactttttccatttgttg 25219075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 30508764 - 30508824
Alignment:
Q  173 tgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaattaccac 233  Q
    |||||||||||| |||||||| ||| |||| |||| |||| ||||||||| ||||| ||||    
T  30508764 tgggttaacggtccaaaacaactttgcacacacaatcaatcaaaacatttaaaattgccac 30508824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 37142969 - 37143013
Alignment:
Q  159 tgattttaatgggatgggttaacggttcaaaacaattttacacat 203  Q
    ||||||||||| | |||||| |||||||||||||||||| |||||    
T  37142969 tgattttaatgtggtgggttgacggttcaaaacaattttgcacat 37143013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 375112 - 375070
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  375112 tgggttaagatcctctccatttataaatttctccatttgttgc 375070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 23459803 - 23459844
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  23459803 gggtcaagatcctctccatttataaatttttccatttgttgc 23459844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 29188772 - 29188731
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  29188772 gggtcaagatcctctccatttataaatttttccatttgttgc 29188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 42380312 - 42380271
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  42380312 gggttaagatcctctccatttataactttttccatttgttgc 42380271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 3354737 - 3354777
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttg 281  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  3354737 gggtcaagatcctctccatttataaatttttccatttgttg 3354777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 40254111 - 40254147
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| ||||||||||||||||    
T  40254111 aagatcctctccatttataactttttccatttgttgc 40254147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 8063001 - 8063048
Alignment:
Q  186 caaaacaattttacacatacaaacaataaaaacattttaaattaccac 233  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||| ||||    
T  8063001 caaaacagttttacacacacaaacaattaaaacattttaaattgccac 8063048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 41435344 - 41435301
Alignment:
Q  239 ttgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||    
T  41435344 ttgggtcaagattctctccatttataactttttccatttgttgc 41435301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 36402419 - 36402385
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccat 275  Q
    |||| ||||||||||||||||||||||||||||||    
T  36402419 gggtcaagatcctctccatttataaatttttccat 36402385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 3594794 - 3594835
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||| ||||||||||    
T  3594794 gggtcaagatcctctccatttataacttttttcatttgttgc 3594835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 3594976 - 3594935
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||| ||||    
T  3594976 gggtaaagatcctctccatttataactttttccatttattgc 3594935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 13780617 - 13780576
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| ||||||||||||||||||||  |||||||||||||||    
T  13780617 gggtaaagatcctctccatttataacattttccatttgttgc 13780576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 24241782 - 24241741
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  24241782 gggtcaagatcctctccatttataaatttttccatttgttgc 24241741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 17867798 - 17867758
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttg 281  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  17867798 gggttaagatcctctccatttataactttttccatttgttg 17867758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 29819815 - 29819756
Alignment:
Q  173 tgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaattacca 232  Q
    |||||| || |||||||| |||||||||||||| | |||| |||||||||||||||||||    
T  29819815 tgggttgactgttcaaaataattttacacatacgatcaattaaaacattttaaattacca 29819756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 1937106 - 1937152
Alignment:
Q  236 aaattgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  1937106 aaatggggtcaagatcctctccatttataaatttttcaatttgttgc 1937152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 30905080 - 30905039
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  30905080 gggtaaagatcctctccatttataattttttccatttgttgc 30905039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 17867621 - 17867657
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17867621 aagatcctctccatttataactttttccatttgttgc 17867657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 280
Target Start/End: Original strand, 34612498 - 34612529
Alignment:
Q  249 atcctctccatttataaatttttccatttgtt 280  Q
    ||||||||||||||||||||||||||||||||    
T  34612498 atcctctccatttataaatttttccatttgtt 34612529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 26749504 - 26749546
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| || ||||||||||||||||||||||| ||||||||||    
T  26749504 tgggtcaatatcctctccatttataaattttttcatttgttgc 26749546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 15010501 - 15010538
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttg 278  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  15010501 gggttaagatcctcttcatttataattttttccatttg 15010538  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 34612674 - 34612646
Alignment:
Q  249 atcctctccatttataaatttttccattt 277  Q
    |||||||||||||||||||||||||||||    
T  34612674 atcctctccatttataaatttttccattt 34612646  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 35205540 - 35205488
Alignment:
Q  180 acggttcaaaacaattttacacatacaaacaataaaaacattttaaattacca 232  Q
    ||||| |||||||||||| |||||||||  ||| ||||||||| |||||||||    
T  35205540 acggtacaaaacaattttgcacatacaacaaattaaaacatttaaaattacca 35205488  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 52279996 - 52280037
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  52279996 gggttaagatcctctccatttataaattttttcatttgttgc 52280037  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 6948786 - 6948828
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||    
T  6948786 tgggtaaagatcctctccatttataatttttttcatttgttgc 6948828  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 18107455 - 18107421
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgtt 280  Q
    |||||||||||||||||||| ||||||||||||||    
T  18107455 aagatcctctccatttataactttttccatttgtt 18107421  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 13615298 - 13615339
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  13615298 gggtaaagatcctctacatttataactttttccatttgttgc 13615339  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 18107278 - 18107319
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||| ||||||||||    
T  18107278 gggtaaagatcctctccatttataacttttttcatttgttgc 18107319  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 30077601 - 30077642
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||| ||||    
T  30077601 gggtcaagatcctctccatttataaattttttcatttattgc 30077642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 36004941 - 36004905
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  36004941 aagatcctctccatttataacttttttcatttgttgc 36004905  T

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Target: scaffold0664 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 4657 - 4698
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  4657 gggtaaagatcctctccatttataactttttccatttgttgc 4698  T

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Target: scaffold0664; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 4834 - 4799
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttg 281  Q
    |||||||||||||||||||| |||||||||||||||    
T  4834 aagatcctctccatttataactttttccatttgttg 4799  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 2984346 - 2984387
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttg 281  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  2984346 tgggtcaagatcctctccatttataaattttttcatttgttg 2984387  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 3041264 - 3041305
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  3041264 gggtcaagatcctctccatttataaattttttcatttgttgc 3041305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 36290720 - 36290679
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  36290720 gggtcaagatcctctccatttataaatttttctatttgttgc 36290679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 11960546 - 11960585
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  11960546 gggtcaagatcctctccatttataaatttttctatttgtt 11960585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 2883825 - 2883784
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||| | ||||| ||||||||||    
T  2883825 gggttaagatcctctccatttattacttttttcatttgttgc 2883784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 36880107 - 36880066
Alignment:
Q  187 aaaacaattttacacatacaaacaataaaaacattttaaatt 228  Q
    ||||||||||| ||||||||| |||| |||||||||||||||    
T  36880107 aaaacaattttgcacatacaatcaatcaaaacattttaaatt 36880066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 40162666 - 40162707
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| |||||| |||||||||    
T  40162666 gggtcaagatcctctccatttataactttttctatttgttgc 40162707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 8675134 - 8675098
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  8675134 aagatcctctccatttataacttttttcatttgttgc 8675098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 19179395 - 19179427
Alignment:
Q  248 gatcctctccatttataaatttttccatttgtt 280  Q
    |||||||||||||||||| ||||||||||||||    
T  19179395 gatcctctccatttataattttttccatttgtt 19179427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 36290528 - 36290568
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgtt 280  Q
    ||||| || ||||||||||||||||||||||| ||||||||    
T  36290528 tgggtcaatatcctctccatttataaattttttcatttgtt 36290568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 3030 - 3070
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttg 281  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  3030 gggttaagaccctctccatttataaattttttcatttgttg 3070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 3050 - 3090
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttg 281  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  3050 gggttaagaccctctccatttataaattttttcatttgttg 3090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 25750 - 25709
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  25750 gggtaaagatcctctacatttataactttttccatttgttgc 25709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 17261 - 17302
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||| | ||||||||||    
T  17261 gggtcaagatcctctccatttataaatttcttcatttgttgc 17302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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