View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_5 (Length: 570)
Name: NF4285_high_5
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 6 - 552
Target Start/End: Original strand, 3495571 - 3496117
Alignment:
| Q |
6 |
aggagcacagatggagggattaagagttaggttgggcactccaccagatgtgcttccgttggctacagtgacagcttgatttgccaatgtacgaaaaatc |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3495571 |
aggaccactgatggagggattaagagttaggttgggcactccaccagatgtgcttccgctggctacagtgacagcttgatttgccaatgtacgaaaaatc |
3495670 |
T |
|
| Q |
106 |
ttagcataatgccgcaaccgagtgattaaatgtgatgccagatcaataactgaatcaacataggcctacataatatattgaaacagttatgagatgtata |
205 |
Q |
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| T |
3495671 |
ttagcataatgccgcaaccgagtgatcaaatgtgatgccagatcaataactgaatcaacataggcctacataatatattgaaacagttatgagatgtata |
3495770 |
T |
|
| Q |
206 |
tacagttaaatgttaaacagaatcatagcaacaccaactcattgaaagaaaggaggcaatcaaagggttacaaatacaaacacatttaataggttggtag |
305 |
Q |
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| T |
3495771 |
tacagttaaatgttaaacagaatcatagcaacaccaactcattgaaagaaaggaggcaatcagagggttacaaatacaaacacatttaataggttggtag |
3495870 |
T |
|
| Q |
306 |
atatatttatctatatggtgtattatatttgcnnnnnnntaaattattttaccagtgtggatataaatagaagtatgtatggaaaaaactataaactccc |
405 |
Q |
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| T |
3495871 |
atatatttatctatatggtgtattatatttgcaaaaaaataaattattttaccagtgtggatataaatagaagtatgtatggaaaaaactataaactccc |
3495970 |
T |
|
| Q |
406 |
catcaaacaaaaaactataattccaatttacaattgtaaacaaacaaacctgaatacatggagttagttcaggttcaacagccatttcttccatgtcaaa |
505 |
Q |
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| T |
3495971 |
catcaaacaaaaaactataattccaatttacaattgtaaacaaacaaacctgaatacatggagttagttcaggttcaacagccatttcttccatgtcaaa |
3496070 |
T |
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| Q |
506 |
gttggatagtatctcctcggatgcctgccatggatcaggcaataaag |
552 |
Q |
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| T |
3496071 |
gttggatagtatctcctcggatgcctgccatggatcaggcaataaag |
3496117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 71 - 385
Target Start/End: Original strand, 3509789 - 3510094
Alignment:
| Q |
71 |
cagtgacagcttgatttgccaatgtacgaaaaatcttagcataatgccgcaaccgagtgattaaatgtgatgccagatcaataactgaatcaacataggc |
170 |
Q |
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| T |
3509789 |
cagtggcagcttgacttgccagtgtacgacaaaatttagcataacaccgcaaccgtgtgaaaaaagataaagctagatcaagaactgaatcaacataggc |
3509888 |
T |
|
| Q |
171 |
ctacataatatattgaaacagttatgagatgtatatacagttaaatgttaaacagaatcatagcaacaccaactcattgaaagaaaggaggcaatcaaag |
270 |
Q |
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| T |
3509889 |
ctacgtaatat--------------gagttgtatatacagttaaatgtttaacaaaatcaaagcaacaccaactcactgaaagaagggaggcaatcgaag |
3509974 |
T |
|
| Q |
271 |
ggttacaa-----atacaaacacatttaataggttggtagatatatttatctatatggtgtattatatttgcnnnnnnntaaattattttaccagtgtgg |
365 |
Q |
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| T |
3509975 |
ggttacattacatatagaaacacatttaataggttggtagatatatttatctatacggtgtattatacatgtaacaatataagttattttaccagtgcga |
3510074 |
T |
|
| Q |
366 |
atataaatagaagtatgtat |
385 |
Q |
| |
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| T |
3510075 |
atataaatacaagtatgtat |
3510094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 491
Target Start/End: Original strand, 3510206 - 3510266
Alignment:
| Q |
430 |
aatttacaattgtaaacaaacaaacctgaatacatggagttagttcaggttcaacagccatt |
491 |
Q |
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||||||||| ||||| |||||||||||||||||||| | ||| | ||||||||||||||||| |
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| T |
3510206 |
aatttacaactgtaa-caaacaaacctgaatacatgaatttaatgcaggttcaacagccatt |
3510266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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