View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4285_high_51 (Length: 252)
Name: NF4285_high_51
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 35925714 - 35925482
Alignment:
| Q |
1 |
ccgaacctaaaccgaaaaaatatcaacaacttttcggttttactgaatattagatggagacttcatgtcctgatcatttgcagtactagttgttgttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35925714 |
ccgaacctaaaccgaaaaaatatcaagaacttttcggttttactgaaaattagatggagacttcatgtcctgatcatttaatgtactagttgttgttgtg |
35925615 |
T |
|
| Q |
101 |
ggatttatgtttccatctgcagctggtgaaaggtgactcgactgtcctacttctttgacaatctctttggaatctgaattactatttcgagcagcagcag |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||| || | |
|
|
| T |
35925614 |
ggatttatgtttccatctgcagccggtaaaaggtgactcgattgtcttacttctttgacaatctcttcggaatctgaattaccatttcgagcagtggc-g |
35925516 |
T |
|
| Q |
201 |
catcagccaaaatttttacacctgcttccttagc |
234 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||| |
|
|
| T |
35925515 |
catcagtcaaaattctttcacctgcttccttagc |
35925482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 35556048 - 35556123
Alignment:
| Q |
56 |
ggagacttcatgtcctgatcatttgcagtacta---gttgttgttgtgggatttatgtttccatctgcagctggtg |
128 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
35556048 |
ggagacttcatgtcctgatcattcgcagtactagtggttgtcgttttgggatttatgtttccacctgcagccggtg |
35556123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 35544816 - 35544886
Alignment:
| Q |
56 |
ggagacttcatgtcctgatcatttgcagtactagttg---ttgttgtgggatttatgtttccatctgcagc |
123 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35544816 |
ggagactttttgtcctgatcatttgcagcacgagttgttgttgttgtgggatttatgtttccatctgcagc |
35544886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 34990694 - 34990641
Alignment:
| Q |
68 |
tcctgatcatttgcagtactagttgttgttgtgggatttatgtttccatctgca |
121 |
Q |
| |
|
|||||||||||||| | || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
34990694 |
tcctgatcatttgctgcaccagttgttgatgtgggatttatgtttccatctgca |
34990641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 35919930 - 35919891
Alignment:
| Q |
56 |
ggagacttcatgtcctgatcatttgcagtactagttgttg |
95 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
35919930 |
ggagacttcatgtcctgattatttgccgtactagttgttg |
35919891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 35527669 - 35527723
Alignment:
| Q |
66 |
tgtcctgatcatttgcagtac---tagttgttgttgtgggatttatgtttccatc |
117 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||||||||| ||||||||| |
|
|
| T |
35527669 |
tgtcctgatcatttgcagcaccagttgttgttgttgtgggatttaagtttccatc |
35527723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 35556208 - 35556240
Alignment:
| Q |
170 |
gaatctgaattactatttcgagcagcagcagca |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
35556208 |
gaatcagaattactatttcgagcagcagcagca |
35556240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 35891482 - 35891442
Alignment:
| Q |
56 |
ggagacttcatgtcctgatcatttgcagtactagttgttgt |
96 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
35891482 |
ggagacttcaagtcctcatgatttgcagtactagttgttgt |
35891442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University