View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_54 (Length: 248)
Name: NF4285_high_54
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43528905 - 43528666
Alignment:
| Q |
1 |
tttcttttcccaccctatgtgcttattgtgcgccttctcatttgaccattttaccttcgtttgaattttataatccgaaatgtatttgacaattttttaa |
100 |
Q |
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| T |
43528905 |
tttcttttcccaccctatgtgcttattgtgcgccttctcatttgaccattttaccttcgtttgaattttataatctgaaatgtatttgacaattttttaa |
43528806 |
T |
|
| Q |
101 |
ttgtaaaatttgacctgtatttacctagttttgatcagattcaacttggttaattaaaaatataatatgaaatctgaacgcacgcccaatatttgttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
43528805 |
ttgtaaaatttgacctgtatttacctagtttttatcagattcaacttggttaattaaaaatataatatgaaatctgaacacatgcccaatatttgttcag |
43528706 |
T |
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| Q |
201 |
attatataatatttgttcaaatttcttttcccaccctatg |
240 |
Q |
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| T |
43528705 |
attatataatatttgttcaaatttcttttcccaccctatg |
43528666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 24473265 - 24473312
Alignment:
| Q |
41 |
tttgaccattttaccttcgtttgaattttataatccgaaatgtatttga |
89 |
Q |
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| T |
24473265 |
tttgaccattttaa-tgcgtttgaattttataatccgaagtgtatttga |
24473312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 26573762 - 26573819
Alignment:
| Q |
42 |
ttgaccattttaccttcgtttgaattttataatccgaaatgtatttgacaatttttta |
99 |
Q |
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| T |
26573762 |
ttgaccattttacctttgtttgaattttataatccaaaacggatttgacattttttta |
26573819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 53967351 - 53967304
Alignment:
| Q |
42 |
ttgaccattttaccttcgtttgaattttataatccgaaatgtatttga |
89 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
53967351 |
ttgaccattttacctctatttgaattttataatccaaaatgtatttga |
53967304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 38274125 - 38274227
Alignment:
| Q |
42 |
ttgaccattttaccttcgtttgaattttataatccgaaatgtatttgacaattttttaattgtaaaatttgacctgtatttacctagttttgatcagatt |
141 |
Q |
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|||| ||||||||||| |||| |||||||||||| || |||||||||| ||||| ||| |||||| ||| ||||||||| | ||||||||| ||| |
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| T |
38274125 |
ttgatcattttacctttatttggattttataatccaaagagtatttgacattttttagattataaaatctgaactgtatttatacaattttgatcaaatt |
38274224 |
T |
|
| Q |
142 |
caa |
144 |
Q |
| |
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||| |
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| T |
38274225 |
caa |
38274227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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