View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_high_57 (Length: 247)

Name: NF4285_high_57
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_high_57
NF4285_high_57
[»] chr4 (20 HSPs)
chr4 (66-229)||(48645037-48645200)
chr4 (5-65)||(48645234-48645294)
chr4 (67-131)||(48646855-48646918)
chr4 (5-44)||(48813787-48813826)
chr4 (5-41)||(11601674-11601710)
chr4 (6-53)||(35401740-35401787)
chr4 (6-41)||(41761832-41761867)
chr4 (6-44)||(319273-319311)
chr4 (6-44)||(320951-320989)
chr4 (7-45)||(4169685-4169723)
chr4 (6-44)||(4173791-4173829)
chr4 (5-43)||(20819986-20820024)
chr4 (6-44)||(33264382-33264420)
chr4 (6-44)||(33266061-33266099)
chr4 (6-44)||(41781539-41781577)
chr4 (6-44)||(43507167-43507205)
chr4 (6-44)||(43508704-43508742)
chr4 (6-44)||(43519424-43519462)
chr4 (6-44)||(49524784-49524822)
chr4 (6-44)||(51013937-51013975)
[»] chr7 (17 HSPs)
chr7 (6-52)||(24226573-24226619)
chr7 (5-46)||(46437105-46437146)
chr7 (6-44)||(13169734-13169772)
chr7 (6-46)||(39859315-39859355)
chr7 (7-47)||(47384291-47384331)
chr7 (5-44)||(38549547-38549586)
chr7 (6-44)||(56330-56368)
chr7 (6-44)||(23904583-23904621)
chr7 (6-44)||(27666151-27666189)
chr7 (6-44)||(29996600-29996638)
chr7 (6-44)||(35403670-35403708)
chr7 (6-40)||(35691431-35691465)
chr7 (7-45)||(37113940-37113978)
chr7 (6-43)||(29994907-29994944)
chr7 (6-51)||(35401962-35402007)
chr7 (5-45)||(37115611-37115651)
chr7 (5-41)||(37796266-37796302)
[»] chr6 (12 HSPs)
chr6 (5-54)||(6902947-6902996)
chr6 (5-46)||(8605375-8605416)
chr6 (2-58)||(21091092-21091148)
chr6 (5-47)||(10569969-10570011)
chr6 (5-44)||(6899485-6899524)
chr6 (5-44)||(9400085-9400124)
chr6 (6-45)||(18645154-18645193)
chr6 (6-45)||(32518548-32518587)
chr6 (6-44)||(7371175-7371213)
chr6 (6-44)||(32516877-32516915)
chr6 (6-43)||(11355223-11355260)
chr6 (5-41)||(21068628-21068664)
[»] chr5 (15 HSPs)
chr5 (6-47)||(34328878-34328919)
chr5 (6-44)||(36057699-36057737)
chr5 (4-44)||(8539675-8539715)
chr5 (6-46)||(21843043-21843083)
chr5 (7-47)||(34327632-34327672)
chr5 (6-45)||(2852885-2852924)
chr5 (6-45)||(2854412-2854451)
chr5 (5-48)||(41493840-41493883)
chr5 (6-44)||(7267843-7267881)
chr5 (6-44)||(12738787-12738825)
chr5 (6-44)||(12801610-12801648)
chr5 (6-44)||(17574318-17574356)
chr5 (6-44)||(30463900-30463938)
chr5 (2-44)||(32134231-32134273)
chr5 (6-42)||(17577986-17578022)
[»] chr1 (22 HSPs)
chr1 (5-45)||(52641887-52641927)
chr1 (6-45)||(2869578-2869617)
chr1 (5-52)||(25278846-25278893)
chr1 (5-44)||(25279038-25279077)
chr1 (6-46)||(8167940-8167980)
chr1 (6-46)||(34778224-34778264)
chr1 (6-49)||(27089330-27089373)
chr1 (6-45)||(33599186-33599225)
chr1 (6-44)||(4856052-4856090)
chr1 (6-44)||(6818764-6818802)
chr1 (6-44)||(8169619-8169657)
chr1 (6-44)||(25276742-25276780)
chr1 (6-44)||(25278454-25278492)
chr1 (6-44)||(26223587-26223625)
chr1 (6-44)||(31236819-31236857)
chr1 (6-44)||(34776569-34776607)
chr1 (6-44)||(37344342-37344380)
chr1 (6-44)||(37346013-37346051)
chr1 (6-44)||(46583642-46583680)
chr1 (6-43)||(6816866-6816903)
chr1 (7-44)||(45044949-45044986)
chr1 (6-43)||(50554164-50554201)
[»] chr8 (23 HSPs)
chr8 (5-44)||(26238726-26238765)
chr8 (6-44)||(8609893-8609931)
chr8 (6-44)||(34681117-34681155)
chr8 (5-50)||(600754-600799)
chr8 (2-43)||(9795535-9795576)
chr8 (6-47)||(29239238-29239279)
chr8 (5-46)||(41823888-41823929)
chr8 (4-41)||(41825748-41825785)
chr8 (5-41)||(26242419-26242455)
chr8 (6-45)||(601755-601794)
chr8 (6-45)||(13282477-13282516)
chr8 (5-44)||(43262187-43262226)
chr8 (6-44)||(27691154-27691192)
chr8 (6-44)||(27692888-27692926)
chr8 (6-44)||(29237151-29237189)
chr8 (6-44)||(33762764-33762802)
chr8 (6-44)||(35510870-35510908)
chr8 (6-44)||(38548882-38548920)
chr8 (6-44)||(42943477-42943515)
chr8 (5-46)||(7745217-7745258)
chr8 (6-47)||(22273942-22273983)
chr8 (6-43)||(33707207-33707244)
chr8 (5-41)||(42941777-42941813)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-47)||(436262-436304)
[»] chr3 (28 HSPs)
chr3 (5-47)||(611272-611314)
chr3 (6-52)||(3150244-3150290)
chr3 (6-44)||(30598337-30598375)
chr3 (6-44)||(44267981-44268019)
chr3 (6-46)||(38193561-38193601)
chr3 (5-41)||(42282523-42282559)
chr3 (6-42)||(43765139-43765175)
chr3 (6-46)||(46112485-46112525)
chr3 (6-53)||(46310487-46310534)
chr3 (9-44)||(48829356-48829391)
chr3 (5-44)||(51684610-51684649)
chr3 (5-44)||(51686444-51686483)
chr3 (6-45)||(53190865-53190904)
chr3 (6-44)||(2226258-2226296)
chr3 (7-41)||(2377032-2377066)
chr3 (6-44)||(7884950-7884988)
chr3 (6-44)||(27899187-27899225)
chr3 (6-44)||(41977750-41977788)
chr3 (6-44)||(41979403-41979441)
chr3 (6-44)||(44795941-44795979)
chr3 (6-44)||(46308807-46308845)
chr3 (6-44)||(46609149-46609187)
chr3 (6-44)||(53094324-53094362)
chr3 (6-44)||(54898437-54898475)
chr3 (6-44)||(54900125-54900163)
chr3 (6-43)||(2379034-2379071)
chr3 (7-44)||(46611355-46611392)
chr3 (5-41)||(42279510-42279546)
[»] scaffold0058 (3 HSPs)
scaffold0058 (6-50)||(3288-3332)
scaffold0058 (6-50)||(4460-4504)
scaffold0058 (6-44)||(14394-14432)
[»] chr2 (11 HSPs)
chr2 (6-46)||(14387347-14387387)
chr2 (6-46)||(17696204-17696244)
chr2 (5-48)||(19581410-19581453)
chr2 (6-44)||(14389190-14389228)
chr2 (6-44)||(16763076-16763114)
chr2 (8-46)||(19908355-19908393)
chr2 (6-44)||(34400314-34400352)
chr2 (6-44)||(39664854-39664892)
chr2 (6-44)||(42517558-42517596)
chr2 (8-50)||(44709853-44709895)
chr2 (5-41)||(31475130-31475166)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 48645200 - 48645037
Alignment:
Q  66 tgttgtaattgttgtaacaatattacatcgatatagatgaaaactgtccaatagttttaatcaaacaagacattatatatatgtatagcaactgctagta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48645200 tgttgtaattgttgtaacaatattacatcgatatagatgaaaactgtccaatagttttaatcaaacaagacattatatatatgtatagcaactgctagta 48645101  T
Q  166 agtatacaagtaagcctttactaaaatgacatgactctaacgaaggggagtggggtgaaaacaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48645100 agtatacaagtaagcctttactaaaatgacatgactctaacgaaggggagtggggtgaaaacaa 48645037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 48645294 - 48645234
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtctattaaaatattgaattcagc 65  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48645294 tgatttttgaaaattcaaggacgaatttgaggtattagtctattaaaatattgaattcagc 48645234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 48646918 - 48646855
Alignment:
Q  67 gttgtaattgttgtaacaatattacatcgatatagatgaaaactgtccaatagttttaatcaaac 131  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48646918 gttgtaattgttgcaacaatattacatcgatatagatgaaaactgtccaatag-tttaatcaaac 48646855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 48813826 - 48813787
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  48813826 tgatttttgaaaattcaaggacgaatttgaggtattagtc 48813787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 11601710 - 11601674
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    |||||||||||||||||||||||||||| ||||||||    
T  11601710 tgatttttgaaaattcaagaacgaattttaggtatta 11601674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 35401787 - 35401740
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctattaaaat 53  Q
    ||||||| |||||||||| |||||||||||||||||||| | ||||||    
T  35401787 gattttttaaaattcaaggacgaatttgaggtattagtcaactaaaat 35401740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 41761832 - 41761867
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    |||||||||||||||||| |||||||||||||||||    
T  41761832 gatttttgaaaattcaaggacgaatttgaggtatta 41761867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 319311 - 319273
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  319311 gatttttcaaaattcaaggacgaatttgaggtattagtc 319273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 320951 - 320989
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  320951 gatttttcaaaattcaaggacgaatttgaggtattagtc 320989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 4169723 - 4169685
Alignment:
Q  7 atttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  4169723 atttttcaaaattcaaggacgaatttgaggtattagtct 4169685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 4173791 - 4173829
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  4173791 gatttttcaaaattcaaggacgaatttgaggtattagtc 4173829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 20820024 - 20819986
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagt 43  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  20820024 tgatttttgaaaattcaaggacgaagttgaggtattagt 20819986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 33264420 - 33264382
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  33264420 gatttttcaaaattcaaggacgaatttgaggtattagtc 33264382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 33266061 - 33266099
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  33266061 gatttttcaaaattcaagaacgaatttgagatattagtc 33266099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 41781577 - 41781539
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  41781577 gattttttaaaattcaagaacaaatttgaggtattagtc 41781539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 43507205 - 43507167
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  43507205 gatttttcaaaattcaaggacgaatttgaggtattagtc 43507167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 43508704 - 43508742
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  43508704 gatttttcaaaattcaaggacgaatttgaggtattagtc 43508742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 43519462 - 43519424
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  43519462 gatttttcaaaattcaaggacgaatttgaggtattagtc 43519424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 49524784 - 49524822
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  49524784 gattttttaaaattcaaggacgaatttgaggtattagtc 49524822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 51013937 - 51013975
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  51013937 gatttttcaaaattcaaggacgaatttgaggtattagtc 51013975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 24226619 - 24226573
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctattaaaa 52  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  24226619 gatttttgaaaattcaaggacgaatttgaggtattagtatattaaaa 24226573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 46437146 - 46437105
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  46437146 tgatttttgaaaattcaaggacgaatttgaggtattagtcta 46437105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 13169734 - 13169772
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13169734 gatttttgaaaattcaaggacgaatttgaggtattagtc 13169772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 39859315 - 39859355
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  39859315 gattttttaaaattcaaggacgaatttgaggtattagtcta 39859355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 47384331 - 47384291
Alignment:
Q  7 atttttgaaaattcaagaacgaatttgaggtattagtctat 47  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  47384331 atttttcaaaattcaaggacgaatttgaggtattagtctat 47384291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 38549586 - 38549547
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  38549586 tgatttttgaaaattcaaggacgaatttaaggtattagtc 38549547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 56368 - 56330
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  56368 gatttttcaaaattcaaggacgaatttgaggtattagtc 56330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 23904621 - 23904583
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  23904621 gattttttaaaattcaaggacgaatttgaggtattagtc 23904583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 27666151 - 27666189
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  27666151 gatttttcaaaattcaaggacgaatttgaggtattagtc 27666189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 29996600 - 29996638
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  29996600 gatttttcaaaattcaaggacgaatttgaggtattagtc 29996638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 35403670 - 35403708
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  35403670 gattttttaaaattcaaggacgaatttgaggtattagtc 35403708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 35691465 - 35691431
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtatt 40  Q
    |||||||||||||||||| ||||||||||||||||    
T  35691465 gatttttgaaaattcaaggacgaatttgaggtatt 35691431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 37113978 - 37113940
Alignment:
Q  7 atttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  37113978 attttttaaaattcaaggacgaatttgaggtattagtct 37113940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 29994944 - 29994907
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagt 43  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  29994944 gatttttcaaaattcaaggacgaatttgaggtattagt 29994907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 35402007 - 35401962
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctattaaa 51  Q
    ||||||| |||||||||| ||||||||||| ||||||||| |||||    
T  35402007 gatttttcaaaattcaaggacgaatttgagatattagtcttttaaa 35401962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 37115611 - 37115651
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    |||||||| |||||||||  |||||||||||||||||||||    
T  37115611 tgattttttaaaattcaatgacgaatttgaggtattagtct 37115651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 37796266 - 37796302
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    ||||||||||||||||||| || ||||||||||||||    
T  37796266 tgatttttgaaaattcaaggacaaatttgaggtatta 37796302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 6902947 - 6902996
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtctattaaaata 54  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| ||||    
T  6902947 tgatttttgaaaattcaaggacgaatttgaggtattagtcttttataata 6902996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 8605375 - 8605416
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  8605375 tgatttttgaaaattcaaggacgaatttgaggtattagtcta 8605416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 21091148 - 21091092
Alignment:
Q  2 ggttgatttttgaaaattcaagaacgaatttgaggtattagtctattaaaatattga 58  Q
    |||||||||||||||||||||| ||||||||||||||||| || | ||||| |||||    
T  21091148 ggttgatttttgaaaattcaaggacgaatttgaggtattactcgactaaaaaattga 21091092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 10569969 - 10570011
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtctat 47  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  10569969 tgattttttaaaattcaaggacgaatttgaggtattagtctat 10570011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 6899524 - 6899485
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  6899524 tgatttttgaaaattcaaggacaaatttgaggtattagtc 6899485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 9400085 - 9400124
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  9400085 tgatttttcaaaattcaaggacgaatttgaggtattagtc 9400124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 18645154 - 18645193
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  18645154 gatttttcaaaattcaaggacgaatttgaggtattagtct 18645193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 32518548 - 32518587
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  32518548 gatttttcaaaattcaaggacgaatttgaggtattagtct 32518587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 7371213 - 7371175
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  7371213 gatttttgaaaattcaaggacgaagttgaggtattagtc 7371175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 32516915 - 32516877
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  32516915 gattttttaaaattcaaggacgaatttgaggtattagtc 32516877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 11355260 - 11355223
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagt 43  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  11355260 gattttttaaaattcaaggacgaatttgaggtattagt 11355223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 21068664 - 21068628
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  21068664 tgattgttgaaaattcaaggacgaatttgaggtatta 21068628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 34328878 - 34328919
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctat 47  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  34328878 gatttttgaaaattcaaggacgaatttgaggtattagtctat 34328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 36057699 - 36057737
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  36057699 gatttttgaaaattcaaggacgaatttgaggtattagtc 36057737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 8539715 - 8539675
Alignment:
Q  4 ttgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  8539715 ttgatttttcaaaattcaaggacgaatttgaggtattagtc 8539675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 21843043 - 21843083
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  21843043 gatttttcaaaattcaaggacgaatttgaggtattagtcta 21843083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 34327672 - 34327632
Alignment:
Q  7 atttttgaaaattcaagaacgaatttgaggtattagtctat 47  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  34327672 attttagaaaattcaaggacgaatttgaggtattagtctat 34327632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 2852924 - 2852885
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  2852924 gattttttaaaattcaaggacgaatttgaggtattagtct 2852885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 2854412 - 2854451
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  2854412 gatttttcaaaattcaaggacgaatttgaggtattagtct 2854451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 41493883 - 41493840
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtctatt 48  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||    
T  41493883 tgatttttgaaaattcaaggacgaagttgaggtattactctatt 41493840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 7267881 - 7267843
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  7267881 gattttttaaaattcaaggacgaatttgaggtattagtc 7267843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 12738787 - 12738825
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  12738787 gattttttaaaattcaaggacgaatttgaggtattagtc 12738825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 12801610 - 12801648
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  12801610 gattttttaaaattcaaggacgaatttgaggtattagtc 12801648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 17574356 - 17574318
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  17574356 gattttttaaaattcaaggacgaatttgaggtattagtc 17574318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 30463938 - 30463900
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  30463938 gattttttaaaattcaaggacgaatttgaggtattagtc 30463900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 32134273 - 32134231
Alignment:
Q  2 ggttgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||||||||||||||||  || |||||||||||||||||    
T  32134273 ggttgatttttgaaaattcaatgacaaatttgaggtattagtc 32134231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 17577986 - 17578022
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattag 42  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  17577986 gatttttcaaaattcaaggacgaatttgaggtattag 17578022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 52641927 - 52641887
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  52641927 tgatttttgaaaattcaaggacgaatttgaggtattagtct 52641887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 2869617 - 2869578
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  2869617 gatttttgaaaattcaaggacgaatttgaggtattagtct 2869578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 25278893 - 25278846
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtctattaaaa 52  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||    
T  25278893 tgatttttgaaaattcaaggatgaatttgaggtattagtcaattaaaa 25278846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 25279038 - 25279077
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  25279038 tgatttttgaaaattcaaggacgaatttgaggtattagtc 25279077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 8167980 - 8167940
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  8167980 gatttttcaaaattcaaggacgaatttgaggtattagtcta 8167940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 34778224 - 34778264
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  34778224 gattttttaaaattcaaggacgaatttgaggtattagtcta 34778264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 27089330 - 27089373
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctatta 49  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||    
T  27089330 gatttttcaaaattcaaggacgaatttgaggtattagtcaatta 27089373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 33599225 - 33599186
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  33599225 gatttttcaaaattcaaggacgaatttgaggtattagtct 33599186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 4856052 - 4856090
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  4856052 gattttttaaaattcaaggacgaatttgaggtattagtc 4856090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 6818764 - 6818802
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  6818764 gattttttaaaattcaaggacgaatttgaggtattagtc 6818802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 8169619 - 8169657
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  8169619 gatttttcaaaattcaaggacgaatttgaggtattagtc 8169657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 25276780 - 25276742
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  25276780 gatttttcaaaattcaaggacgaatttgaggtattagtc 25276742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 25278454 - 25278492
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  25278454 gattttttaaaattcaaggacgaatttgaggtattagtc 25278492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 26223625 - 26223587
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  26223625 gatttttcaaaattcaaggacgaatttgaggtattagtc 26223587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 31236857 - 31236819
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  31236857 gattttttaaaattcaaggacgaatttgaggtattagtc 31236819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 34776607 - 34776569
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  34776607 gatttttcaaaattcaaggacgaatttgaggtattagtc 34776569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 37344380 - 37344342
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  37344380 gattttttaaaattcaaggacgaatttgaggtattagtc 37344342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 37346013 - 37346051
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  37346013 gatttttcaaaattcaaggacgaatttgaggtattagtc 37346051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 46583642 - 46583680
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  46583642 gatttttcaaaattcaaggacgaatttgaggtattagtc 46583680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 6816903 - 6816866
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagt 43  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  6816903 gattttttaaaattcaaggacgaatttgaggtattagt 6816866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 45044986 - 45044949
Alignment:
Q  7 atttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  45044986 attttttaaaattcaaggacgaatttgaggtattagtc 45044949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 50554201 - 50554164
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagt 43  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  50554201 gattttttaaaattcaaggacgaatttgaggtattagt 50554164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 26238765 - 26238726
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  26238765 tgatttttgaaaattcaaggacgaatttgaggtattagtc 26238726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 8609893 - 8609931
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  8609893 gattttttaaaattcaagaacgaatttgaggtattagtc 8609931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 34681117 - 34681155
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  34681117 gatttttgaaaattcaaggacgaatttgaggtattagtc 34681155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 600799 - 600754
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtctattaa 50  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||    
T  600799 tgatttttcaaaattcaaggacgaatttgaggtattagtccattaa 600754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 9795576 - 9795535
Alignment:
Q  2 ggttgatttttgaaaattcaagaacgaatttgaggtattagt 43  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  9795576 ggttgatttttgaaaatttaaaaacgaatttgaggtattagt 9795535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 29239238 - 29239279
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctat 47  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  29239238 gatttttcaaaattcaaggacgaatttgaggtattagtctat 29239279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 41823929 - 41823888
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  41823929 tgatttttgaaaattcaaggacgaatttaaggtattagtcta 41823888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 41825748 - 41825785
Alignment:
Q  4 ttgatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    |||||||||||||||||||| |||||||||||||||||    
T  41825748 ttgatttttgaaaattcaaggacgaatttgaggtatta 41825785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 26242419 - 26242455
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    ||||||||||||||||||||||||| |||||||||||    
T  26242419 tgatttttgaaaattcaagaacgaaattgaggtatta 26242455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 601755 - 601794
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  601755 gatttttcaaaattcaaggacgaatttgaggtattagtct 601794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 13282516 - 13282477
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  13282516 gattttttaaaattcaaggacgaatttgaggtattagtct 13282477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 43262187 - 43262226
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  43262187 tgatttttgaaaatttaaggacgaatttgaggtattagtc 43262226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 27691192 - 27691154
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  27691192 gatttttcaaaattcaaggacgaatttgaggtattagtc 27691154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 27692888 - 27692926
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  27692888 gatttttcaaaattcaaggacgaatttgaggtattagtc 27692926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 29237189 - 29237151
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  29237189 gatttttcaaaattcaaggacgaatttgaggtattagtc 29237151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 33762764 - 33762802
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  33762764 gatttttcaaaattcaaggacgaatttgaggtattagtc 33762802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 35510870 - 35510908
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  35510870 gatttttcaaaattcaaggacgaatttgaggtattagtc 35510908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 38548882 - 38548920
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  38548882 gatttttcaaaattcaaggacgaatttgaggtattagtc 38548920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 42943477 - 42943515
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  42943477 gattttttaaaattcaaggacgaatttgaggtattagtc 42943515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 7745217 - 7745258
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||||||||||||||  ||||||||||| ||||||||||    
T  7745217 tgatttttgaaaattcaaagacgaatttgagatattagtcta 7745258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 22273942 - 22273983
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctat 47  Q
    ||||||| |||||||||| || ||||||||||||||||||||    
T  22273942 gattttttaaaattcaaggacaaatttgaggtattagtctat 22273983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 33707244 - 33707207
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagt 43  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  33707244 gatttttcaaaattcaaggacgaatttgaggtattagt 33707207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 42941813 - 42941777
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    |||||||| |||||||||| |||||||||||||||||    
T  42941813 tgattttttaaaattcaaggacgaatttgaggtatta 42941777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 436304 - 436262
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtctat 47  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  436304 tgatttttgaaaattcaagaacgaatttgaggtgttactctat 436262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 611272 - 611314
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtctat 47  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  611272 tgattttttaaaattcaaggacgaatttgaggtattagtctat 611314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 3150290 - 3150244
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctattaaaa 52  Q
    ||||||| |||||||||| ||||||||||||||||||||||| ||||    
T  3150290 gatttttcaaaattcaaggacgaatttgaggtattagtctataaaaa 3150244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 30598375 - 30598337
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  30598375 gatttttgaaaattcaaggacgaatttgaggtattagtc 30598337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 44268019 - 44267981
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  44268019 gatttttgaaaattcaaggacgaatttgaggtattagtc 44267981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 38193561 - 38193601
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  38193561 gatttttcaaaattcaaggacgaatttgaggtattagtcta 38193601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 42282523 - 42282559
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42282523 tgatttttgaaaattcaaggacgaatttgaggtatta 42282559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 43765175 - 43765139
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattag 42  Q
    |||||||||||||||||| ||||||||||||||||||    
T  43765175 gatttttgaaaattcaaggacgaatttgaggtattag 43765139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 46112525 - 46112485
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  46112525 gattttttaaaattcaaggacgaatttgaggtattagtcta 46112485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 46310487 - 46310534
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctattaaaat 53  Q
    ||||||| |||||||||  ||||||||||||||||||||| |||||||    
T  46310487 gatttttcaaaattcaaagacgaatttgaggtattagtcttttaaaat 46310534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 48829391 - 48829356
Alignment:
Q  9 ttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||||||||| ||||||||||||||||||||    
T  48829391 ttttgaaaattcaaggacgaatttgaggtattagtc 48829356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 51684649 - 51684610
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  51684649 tgatttttgaaaattcaaggacgaatttgagatattagtc 51684610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 51686444 - 51686483
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  51686444 tgatttttgaaaatttaaggacgaatttgaggtattagtc 51686483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 53190865 - 53190904
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtct 45  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  53190865 gattttttaaaattcaaggacgaatttgaggtattagtct 53190904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 2226258 - 2226296
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  2226258 gattttttaaaattcaaggacgaatttgaggtattagtc 2226296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 2377066 - 2377032
Alignment:
Q  7 atttttgaaaattcaagaacgaatttgaggtatta 41  Q
    |||||||||||||||| ||||||||||||||||||    
T  2377066 atttttgaaaattcaaaaacgaatttgaggtatta 2377032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 7884950 - 7884988
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  7884950 gattttttaaaattcaaggacgaatttgaggtattagtc 7884988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 27899187 - 27899225
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  27899187 gattttttaaaattcaaggacgaatttgaggtattagtc 27899225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 41977788 - 41977750
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  41977788 gattttttaaaattcaaggacgaatttgaggtattagtc 41977750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 41979403 - 41979441
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  41979403 gatttttcaaaattcaaggacgaatttgaggtattagtc 41979441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 44795941 - 44795979
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  44795941 gatttttcaaaattcaaggacgaatttgaggtattagtc 44795979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 46308845 - 46308807
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  46308845 gatttttcaaaattcaaggacgaatttgaggtattagtc 46308807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 46609187 - 46609149
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  46609187 gatttttcaaaattcaagaacgaatttgagatattagtc 46609149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 53094324 - 53094362
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  53094324 gatttttcaaaattcaaggacgaatttgaggtattagtc 53094362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 54898475 - 54898437
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  54898475 gattttttaaaattcaaggacgaatttgaggtattagtc 54898437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 54900125 - 54900163
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  54900125 gatttttcaaaattcaaggacgaatttgaggtattagtc 54900163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 2379034 - 2379071
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagt 43  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  2379034 gattttttaaaattcaaggacgaatttgaggtattagt 2379071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 46611355 - 46611392
Alignment:
Q  7 atttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  46611355 atttttcaaaattcaaggacgaatttgaggtattagtc 46611392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 42279546 - 42279510
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    ||||||||||||||||||  |||||||||||||||||    
T  42279546 tgatttttgaaaattcaatgacgaatttgaggtatta 42279510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 3332 - 3288
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctattaa 50  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||    
T  3332 gatttttcaaaattcaaggacgaatttgaggtattagtcaattaa 3288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 4504 - 4460
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtctattaa 50  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||    
T  4504 gatttttcaaaattcaaggacgaatttgaggtattagtcaattaa 4460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 14394 - 14432
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  14394 gatttttcaaaattcaaggacgaatttgaggtattagtc 14432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 14387387 - 14387347
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  14387387 gatttttcaaaattcaaggacgaatttgaggtattagtcta 14387347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 17696244 - 17696204
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  17696244 gatttttgaaaattcaaggacgaatttgaggtattaatcta 17696204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 19581453 - 19581410
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtattagtctatt 48  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||    
T  19581453 tgatttttaaaaatttaaggacgaatttgaggtattagtctatt 19581410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 14389190 - 14389228
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  14389190 gatttttgaaaattcaatgacgaatttgaggtattagtc 14389228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 16763114 - 16763076
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  16763114 gatttttaaaaattcaaggacgaatttgaggtattagtc 16763076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 19908355 - 19908393
Alignment:
Q  8 tttttgaaaattcaagaacgaatttgaggtattagtcta 46  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  19908355 ttttttaaaattcaaggacgaatttgaggtattagtcta 19908393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 34400352 - 34400314
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  34400352 gatttttgaaaattcaaggatgaatttgaggtattagtc 34400314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 39664854 - 39664892
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  39664854 gattttttaaaattcaaggacgaatttgaggtattagtc 39664892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 42517596 - 42517558
Alignment:
Q  6 gatttttgaaaattcaagaacgaatttgaggtattagtc 44  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  42517596 gatttttaaaaattcaaggacgaatttgaggtattagtc 42517558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 44709853 - 44709895
Alignment:
Q  8 tttttgaaaattcaagaacgaatttgaggtattagtctattaa 50  Q
    ||||| |||||||||| |||||||||||||||||||| |||||    
T  44709853 ttttttaaaattcaaggacgaatttgaggtattagtcaattaa 44709895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 31475130 - 31475166
Alignment:
Q  5 tgatttttgaaaattcaagaacgaatttgaggtatta 41  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  31475130 tgatttttgaaaattaaagaacgaagttgaggtatta 31475166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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