View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_62 (Length: 239)
Name: NF4285_high_62
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_62 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 7578900 - 7578678
Alignment:
| Q |
16 |
cagtaaggaggtataaaataacgatttattattcttgtgatttaatttacatcaatcactgagtttcctaaatattttaccattatagctatgggtgttt |
115 |
Q |
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| T |
7578900 |
cagtaaggaggtataaaataacgatttattattcttgtgatttaatt-acatcaatcactgagtttcctaaatattttaccattatagctatgggtgttt |
7578802 |
T |
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| Q |
116 |
gatccacaaatgtttgattgtaaaacaaaatacacacacacttattgataagttattaatgaataaatgctaaataaaattctttacctctctcccactc |
215 |
Q |
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| T |
7578801 |
gatccacaaatgtttgattgtaaaacaaaatacacacacacttattgataagttattaatgaataaatgctaaataaaattctttacctctctcccactc |
7578702 |
T |
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| Q |
216 |
aagtggttgttgagctatatcaac |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
7578701 |
aagtggttgttgagctatatcaac |
7578678 |
T |
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