View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_64 (Length: 237)
Name: NF4285_high_64
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_64 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11545508 - 11545294
Alignment:
| Q |
1 |
taatatatgatcctacacgagatgtgaaactttcttgtagaatcaccatttgcctttgagtagggatgaatggctggtccacatgnnnnnnntaattata |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11545508 |
taatgtatgatcctacacgagatgtgaaactttcttgtagaatcatcatttgcctttgagtagggatgaatggctggtccacatgaaaaaaataattata |
11545409 |
T |
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| Q |
101 |
taagtaattggatgttgtatactataccgaataaatttagggctatttaccaaca--aaaacaa---tctagggcataggagttgtcataattttatata |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||| |
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| T |
11545408 |
taagtaattggatgttgtatactataccgaataaatttagggctatttaccaaaaataaaataaaattctagggcataggagttgtcataattttatata |
11545309 |
T |
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| Q |
196 |
cacaattgaagcata |
210 |
Q |
| |
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||||||||||||||| |
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| T |
11545308 |
cacaattgaagcata |
11545294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 11558933 - 11558873
Alignment:
| Q |
21 |
gatgtgaaactttcttgtagaatcaccatttgcctttgagtagggatgaatggctggtcca |
81 |
Q |
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| T |
11558933 |
gatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgactggtcca |
11558873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 11558790 - 11558755
Alignment:
| Q |
175 |
gagttgtcataattttatatacacaattgaagcata |
210 |
Q |
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| T |
11558790 |
gagttgtcatcattttatatacacaattgaagcata |
11558755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 11558840 - 11558804
Alignment:
| Q |
99 |
tataagtaattggatgttgtatactataccgaataaa |
135 |
Q |
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| T |
11558840 |
tataagtgattggatgttatatactataccgaataaa |
11558804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12064030 - 12064101
Alignment:
| Q |
1 |
taatatatgatcctacacgagatgtgaaactttcttgtagaatcaccatttgcctttgagtagggatgaatg |
72 |
Q |
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| T |
12064030 |
taatatatgaccccaccggagatgtgaaactttcctgcagaataaccatttgcctctgagtagggatgaatg |
12064101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 20916274 - 20916225
Alignment:
| Q |
5 |
atatgatcctacacgagatgtgaaactttcttgtagaatcaccatttgcc |
54 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||| |||||||| |
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| T |
20916274 |
atatgatcccacatgagatgtgaaactttcttgtagaatcatcatttgcc |
20916225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 20915840 - 20915875
Alignment:
| Q |
19 |
gagatgtgaaactttcttgtagaatcaccatttgcc |
54 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
20915840 |
gagatgtgaaactttcctgtagaatcaccatttgcc |
20915875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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